miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9767 3' -54.9 NC_002577.1 + 37350 0.67 0.929069
Target:  5'- aAUGCCGUcCGAGUGGUCGGUAauaGCg -3'
miRNA:   3'- -UGCGGUAaGCUUGCCGGCCAUcagCG- -5'
9767 3' -54.9 NC_002577.1 + 4800 0.67 0.929069
Target:  5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 128740 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 128813 0.67 0.929069
Target:  5'- aACGUCGgacgGGACGGCgCGGcgucGUCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGCCG-GCCau--CAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4874 0.67 0.929069
Target:  5'- cGCGCCGa-UGcuCGGCCGGUucuUCGCc -3'
miRNA:   3'- -UGCGGUaaGCuuGCCGGCCAuc-AGCG- -5'
9767 3' -54.9 NC_002577.1 + 82166 0.67 0.923765
Target:  5'- -aGCCGUUCaAGCGGgCGGguggauUAGUCGa -3'
miRNA:   3'- ugCGGUAAGcUUGCCgGCC------AUCAGCg -5'
9767 3' -54.9 NC_002577.1 + 128618 0.67 0.917659
Target:  5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3'
miRNA:   3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 4996 0.67 0.917659
Target:  5'- gGCGCCGUccucaugccccccUCcGAgGGUagcacgCGGUGGUCGCu -3'
miRNA:   3'- -UGCGGUA-------------AGcUUgCCG------GCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 10749 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 122864 0.67 0.912452
Target:  5'- aACGCCGcUCGcggaacACGGUCGcgGGUCGCc -3'
miRNA:   3'- -UGCGGUaAGCu-----UGCCGGCcaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 10990 0.68 0.906445
Target:  5'- cGCGCCGUcccgagaacgUCGucuACGGCucgcguucgCGGgGGUCGCc -3'
miRNA:   3'- -UGCGGUA----------AGCu--UGCCG---------GCCaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 122624 0.68 0.906445
Target:  5'- cGCGCCGUcccgagaacgUCGucuACGGCucgcguucgCGGgGGUCGCc -3'
miRNA:   3'- -UGCGGUA----------AGCu--UGCCG---------GCCaUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 38471 0.68 0.906445
Target:  5'- gGCGuCCuaguagCGAcgGGuuGGUAGUCGCc -3'
miRNA:   3'- -UGC-GGuaa---GCUugCCggCCAUCAGCG- -5'
9767 3' -54.9 NC_002577.1 + 8381 0.68 0.893737
Target:  5'- cCGCCGUUCGccCGGCCG--AG-CGCc -3'
miRNA:   3'- uGCGGUAAGCuuGCCGGCcaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 125233 0.68 0.893737
Target:  5'- cCGCCGUUCGccCGGCCG--AG-CGCc -3'
miRNA:   3'- uGCGGUAAGCuuGCCGGCcaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 56558 0.68 0.893737
Target:  5'- uACGCaCGcUCGAGaCGGCCGcUAGUCa- -3'
miRNA:   3'- -UGCG-GUaAGCUU-GCCGGCcAUCAGcg -5'
9767 3' -54.9 NC_002577.1 + 11739 0.68 0.887043
Target:  5'- gACGCCGgagaGAACGacGCCGGaGGgCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGC--CGGCCaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 121875 0.68 0.887043
Target:  5'- gACGCCGgagaGAACGacGCCGGaGGgCGCg -3'
miRNA:   3'- -UGCGGUaag-CUUGC--CGGCCaUCaGCG- -5'
9767 3' -54.9 NC_002577.1 + 47269 0.69 0.850339
Target:  5'- uGCGUcgCAUUCGAACaGCCGGUAa-CGUg -3'
miRNA:   3'- -UGCG--GUAAGCUUGcCGGCCAUcaGCG- -5'
9767 3' -54.9 NC_002577.1 + 140051 0.69 0.842389
Target:  5'- -gGCCGUUCGAAUGGCguugCGcGaaaGGUCGCc -3'
miRNA:   3'- ugCGGUAAGCUUGCCG----GC-Ca--UCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.