miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 3' -65.2 NC_002577.1 + 141999 0.66 0.527526
Target:  5'- cGCGCGCgUGUauuucuuuuuuuuuuUGGGGGGgggggggggugguggUGGuuGGAg -3'
miRNA:   3'- aCGCGCG-GCA---------------GCCCCCCa--------------ACCggCCU- -5'
9768 3' -65.2 NC_002577.1 + 142367 0.67 0.495739
Target:  5'- gGCGCuG-CGUgGGGGaGGgggGGCCGGc -3'
miRNA:   3'- aCGCG-CgGCAgCCCC-CCaa-CCGGCCu -5'
9768 3' -65.2 NC_002577.1 + 154970 0.67 0.495739
Target:  5'- gGCGCuG-CGUgGGGGaGGgggGGCCGGc -3'
miRNA:   3'- aCGCG-CgGCAgCCCC-CCaa-CCGGCCu -5'
9768 3' -65.2 NC_002577.1 + 135387 0.67 0.477087
Target:  5'- aGUGaagGCUaagucagGUCGGGGGGggGGgCGGGg -3'
miRNA:   3'- aCGCg--CGG-------CAGCCCCCCaaCCgGCCU- -5'
9768 3' -65.2 NC_002577.1 + 129004 0.68 0.434988
Target:  5'- cGCGCGCCGaguaUGGGGGGgcgcgUgcucuccuacGGCCGa- -3'
miRNA:   3'- aCGCGCGGCa---GCCCCCCa----A----------CCGGCcu -5'
9768 3' -65.2 NC_002577.1 + 7433 0.68 0.418432
Target:  5'- --aGCGCgGggGGGGGGUUaGGCCuuGGAa -3'
miRNA:   3'- acgCGCGgCagCCCCCCAA-CCGG--CCU- -5'
9768 3' -65.2 NC_002577.1 + 126181 0.68 0.418432
Target:  5'- --aGCGCgGggGGGGGGUUaGGCCuuGGAa -3'
miRNA:   3'- acgCGCGgCagCCCCCCAA-CCGG--CCU- -5'
9768 3' -65.2 NC_002577.1 + 4609 0.68 0.391971
Target:  5'- cGCGCGCCGaguaUGGGGGGcgcgugcucuccuacGGCCGa- -3'
miRNA:   3'- aCGCGCGGCa---GCCCCCCaa-------------CCGGCcu -5'
9768 3' -65.2 NC_002577.1 + 44181 0.69 0.34891
Target:  5'- -aCG-GCaGUCGGGGaGUUGGCCGGGa -3'
miRNA:   3'- acGCgCGgCAGCCCCcCAACCGGCCU- -5'
9768 3' -65.2 NC_002577.1 + 16500 0.69 0.34891
Target:  5'- aGgGCG-----GGGGGGUUGGCCGGGa -3'
miRNA:   3'- aCgCGCggcagCCCCCCAACCGGCCU- -5'
9768 3' -65.2 NC_002577.1 + 1570 0.7 0.334622
Target:  5'- gGCGUGCCG-CGGauugaGGGUcggGGCCGGc -3'
miRNA:   3'- aCGCGCGGCaGCCc----CCCAa--CCGGCCu -5'
9768 3' -65.2 NC_002577.1 + 132044 0.7 0.334622
Target:  5'- gGCGUGCCG-CGGauugaGGGUcggGGCCGGc -3'
miRNA:   3'- aCGCGCGGCaGCCc----CCCAa--CCGGCCu -5'
9768 3' -65.2 NC_002577.1 + 137607 0.71 0.275684
Target:  5'- uUGCGCGCUGgagugCGaGGGGGUcgUGGCggcgcuucugcgCGGAc -3'
miRNA:   3'- -ACGCGCGGCa----GC-CCCCCA--ACCG------------GCCU- -5'
9768 3' -65.2 NC_002577.1 + 159730 0.71 0.275684
Target:  5'- uUGCGCGCUGgagugCGaGGGGGUcgUGGCggcgcuucugcgCGGAc -3'
miRNA:   3'- -ACGCGCGGCa----GC-CCCCCA--ACCG------------GCCU- -5'
9768 3' -65.2 NC_002577.1 + 161890 0.74 0.183022
Target:  5'- gGCGUGCgGaUCGGGGGGgaGGacuaCGGAg -3'
miRNA:   3'- aCGCGCGgC-AGCCCCCCaaCCg---GCCU- -5'
9768 3' -65.2 NC_002577.1 + 135448 0.74 0.183022
Target:  5'- gGCGUGCgGaUCGGGGGGgaGGacuaCGGAg -3'
miRNA:   3'- aCGCGCGgC-AGCCCCCCaaCCg---GCCU- -5'
9768 3' -65.2 NC_002577.1 + 141013 0.92 0.009905
Target:  5'- aUGCGCGCCGUCGGGGGGUUcGGCggaaCGGAg -3'
miRNA:   3'- -ACGCGCGGCAGCCCCCCAA-CCG----GCCU- -5'
9768 3' -65.2 NC_002577.1 + 156324 0.92 0.009905
Target:  5'- aUGCGCGCCGUCGGGGGGUUcGGCggaaCGGAg -3'
miRNA:   3'- -ACGCGCGGCAGCCCCCCAA-CCG----GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.