miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 15599 0.67 0.916378
Target:  5'- -uUUCGGccuCCCUCCGAuuccuGACGGCGgCa -3'
miRNA:   3'- auAGGCUu--GGGAGGCU-----UUGCCGUgGg -5'
9768 5' -54.8 NC_002577.1 + 159104 0.67 0.934108
Target:  5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3'
miRNA:   3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139366 0.67 0.932603
Target:  5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3'
miRNA:   3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 138931 0.67 0.932603
Target:  5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3'
miRNA:   3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 130324 0.67 0.927433
Target:  5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3'
miRNA:   3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 162658 0.67 0.916378
Target:  5'- --aCCGc-UCCUCCGGAuccgguGCGGC-CCCg -3'
miRNA:   3'- auaGGCuuGGGAGGCUU------UGCCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 11302 0.67 0.916378
Target:  5'- cGUCCGGGCCaaUCGGgaAGCGGgAUCCu -3'
miRNA:   3'- aUAGGCUUGGgaGGCU--UUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 96832 0.67 0.916378
Target:  5'- cAUCC---CCCUCCGAgaggaccgaaGACGgGCGCCUu -3'
miRNA:   3'- aUAGGcuuGGGAGGCU----------UUGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 367 0.68 0.898021
Target:  5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3'
miRNA:   3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 12035 0.68 0.870341
Target:  5'- --cCCGggUCgUcgcCCGGGuCGGCGCCCg -3'
miRNA:   3'- auaGGCuuGGgA---GGCUUuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 6594 0.68 0.903122
Target:  5'- --cCCGAcgucuCCCUCCGAuucaaaaguacuGCGGCACgaCCu -3'
miRNA:   3'- auaGGCUu----GGGAGGCUu-----------UGCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 81978 0.68 0.898021
Target:  5'- aAUCC--ACCCgcCCGcuuGAACGGCugCCa -3'
miRNA:   3'- aUAGGcuUGGGa-GGC---UUUGCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 76474 0.68 0.877593
Target:  5'- --aCCGGuugACCgCUCCGucgauaucucGCGGCACCUg -3'
miRNA:   3'- auaGGCU---UGG-GAGGCuu--------UGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 77410 0.68 0.880433
Target:  5'- aUAUCCGAucCCCguguacaacaagagCCGAGACGGCGa-- -3'
miRNA:   3'- -AUAGGCUu-GGGa-------------GGCUUUGCCGUggg -5'
9768 5' -54.8 NC_002577.1 + 133247 0.68 0.898021
Target:  5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3'
miRNA:   3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 123051 0.68 0.904374
Target:  5'- gGUCCGuuucuGCCCUU----GCGGCGCUCu -3'
miRNA:   3'- aUAGGCu----UGGGAGgcuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 128202 0.68 0.898021
Target:  5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3'
miRNA:   3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 127020 0.68 0.903122
Target:  5'- --cCCGAcgucuCCCUCCGAuucaaaaguacuGCGGCACgaCCu -3'
miRNA:   3'- auaGGCUu----GGGAGGCUu-----------UGCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 10563 0.68 0.904374
Target:  5'- gGUCCGuuucuGCCCUU----GCGGCGCUCu -3'
miRNA:   3'- aUAGGCu----UGGGAGgcuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 5412 0.68 0.898021
Target:  5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3'
miRNA:   3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.