miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 162926 0.69 0.855203
Target:  5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3'
miRNA:   3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 134402 0.69 0.855203
Target:  5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3'
miRNA:   3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 18735 0.69 0.850502
Target:  5'- aUAUCCGGGCCCaaCUGcAAGCGGUaauucaagcucgaaaACCCc -3'
miRNA:   3'- -AUAGGCUUGGGa-GGC-UUUGCCG---------------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 142660 0.69 0.847329
Target:  5'- -cUCCGAGCCgaaUCgaGAAGgGGCugCCg -3'
miRNA:   3'- auAGGCUUGGg--AGg-CUUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 3216 0.69 0.83926
Target:  5'- -cUCC--AUCCUUCGguGCGGUGCCCg -3'
miRNA:   3'- auAGGcuUGGGAGGCuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 130397 0.69 0.83926
Target:  5'- -cUCC--AUCCUUCGguGCGGUGCCCg -3'
miRNA:   3'- auAGGcuUGGGAGGCuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 84953 0.69 0.83926
Target:  5'- --aCCGAGuCCCU-CGAcGCGGCGCUUg -3'
miRNA:   3'- auaGGCUU-GGGAgGCUuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 130104 0.7 0.822566
Target:  5'- cGUgCGAcgcGCUCUCCGGAuCGGUGCCg -3'
miRNA:   3'- aUAgGCU---UGGGAGGCUUuGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 75259 0.7 0.822566
Target:  5'- cGUUCGAuCCCUCCGAcuUGaGCACUUa -3'
miRNA:   3'- aUAGGCUuGGGAGGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 3510 0.7 0.822566
Target:  5'- cGUgCGAcgcGCUCUCCGGAuCGGUGCCg -3'
miRNA:   3'- aUAgGCU---UGGGAGGCUUuGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 154677 0.7 0.813956
Target:  5'- -cUCCGAGCCgaaUCaGAAGgGGCugCCg -3'
miRNA:   3'- auAGGCUUGGg--AGgCUUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 106874 0.7 0.79625
Target:  5'- aAUCCGAAUCCUCCGAAcCGcuuGUACa- -3'
miRNA:   3'- aUAGGCUUGGGAGGCUUuGC---CGUGgg -5'
9768 5' -54.8 NC_002577.1 + 28000 0.7 0.79625
Target:  5'- aAUCCGGAUUCaguaaCCGAcGCGGCACUg -3'
miRNA:   3'- aUAGGCUUGGGa----GGCUuUGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 40916 0.7 0.787171
Target:  5'- --aCCGAG-CCUCCGGAACGGggauaGCCg -3'
miRNA:   3'- auaGGCUUgGGAGGCUUUGCCg----UGGg -5'
9768 5' -54.8 NC_002577.1 + 21800 0.7 0.787171
Target:  5'- aAUCCcgcGAACCUUCCGGGAUGGaCGCg- -3'
miRNA:   3'- aUAGG---CUUGGGAGGCUUUGCC-GUGgg -5'
9768 5' -54.8 NC_002577.1 + 137672 0.7 0.787171
Target:  5'- cGUCCGGAcauCCCUgCCGggGaCGGUuucgcgucuACCCg -3'
miRNA:   3'- aUAGGCUU---GGGA-GGCuuU-GCCG---------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 161226 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 136112 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 121678 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11936 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.