Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9768 | 5' | -54.8 | NC_002577.1 | + | 133247 | 0.68 | 0.898021 |
Target: 5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3' miRNA: 3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 134402 | 0.69 | 0.855203 |
Target: 5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3' miRNA: 3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 134670 | 0.67 | 0.916378 |
Target: 5'- --aCCGc-UCCUCCGGAuccgguGCGGC-CCCg -3' miRNA: 3'- auaGGCuuGGGAGGCUU------UGCCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 134852 | 0.66 | 0.954523 |
Target: 5'- --aCCGGAUCCggaGGAGCGGUuuccgcaGCCCu -3' miRNA: 3'- auaGGCUUGGGaggCUUUGCCG-------UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 136112 | 0.71 | 0.77236 |
Target: 5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3' miRNA: 3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 137370 | 0.66 | 0.946689 |
Target: 5'- ---gCGAACUCUCgCGGcuaauGCGGCgGCCCu -3' miRNA: 3'- auagGCUUGGGAG-GCUu----UGCCG-UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 137672 | 0.7 | 0.787171 |
Target: 5'- cGUCCGGAcauCCCUgCCGggGaCGGUuucgcgucuACCCg -3' miRNA: 3'- aUAGGCUU---GGGA-GGCuuU-GCCG---------UGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 138234 | 0.67 | 0.934108 |
Target: 5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3' miRNA: 3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 138931 | 0.67 | 0.932603 |
Target: 5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3' miRNA: 3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 139135 | 0.66 | 0.958682 |
Target: 5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3' miRNA: 3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 139366 | 0.67 | 0.932603 |
Target: 5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3' miRNA: 3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 139923 | 0.66 | 0.950916 |
Target: 5'- aGUUCGAuagACCCcggugaggUCCGcAGAgGGCugCCg -3' miRNA: 3'- aUAGGCU---UGGG--------AGGC-UUUgCCGugGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 139996 | 0.66 | 0.936081 |
Target: 5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3' miRNA: 3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 141050 | 1.1 | 0.003615 |
Target: 5'- gUAUCCGAACCCUCCGAAACGGCACCCu -3' miRNA: 3'- -AUAGGCUUGGGAGGCUUUGCCGUGGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 141200 | 0.73 | 0.659788 |
Target: 5'- --gCCGAACCCcCCGA--CGGCGCgCa -3' miRNA: 3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 141352 | 0.66 | 0.958682 |
Target: 5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3' miRNA: 3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 142660 | 0.69 | 0.847329 |
Target: 5'- -cUCCGAGCCgaaUCgaGAAGgGGCugCCg -3' miRNA: 3'- auAGGCUUGGg--AGg-CUUUgCCGugGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 154677 | 0.7 | 0.813956 |
Target: 5'- -cUCCGAGCCgaaUCaGAAGgGGCugCCg -3' miRNA: 3'- auAGGCUUGGg--AGgCUUUgCCGugGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 155985 | 0.66 | 0.958682 |
Target: 5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3' miRNA: 3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5' |
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9768 | 5' | -54.8 | NC_002577.1 | + | 156138 | 0.73 | 0.659788 |
Target: 5'- --gCCGAACCCcCCGA--CGGCGCgCa -3' miRNA: 3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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