miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 77157 0.74 0.598531
Target:  5'- --aCCGAugCUUCCGA--UGGCGCCUc -3'
miRNA:   3'- auaGGCUugGGAGGCUuuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 76474 0.68 0.877593
Target:  5'- --aCCGGuugACCgCUCCGucgauaucucGCGGCACCUg -3'
miRNA:   3'- auaGGCU---UGG-GAGGCuu--------UGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 75259 0.7 0.822566
Target:  5'- cGUUCGAuCCCUCCGAcuUGaGCACUUa -3'
miRNA:   3'- aUAGGCUuGGGAGGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 74324 0.66 0.946689
Target:  5'- -cUCC--GCCCUCUcaAAACGGC-CCCa -3'
miRNA:   3'- auAGGcuUGGGAGGc-UUUGCCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 55207 0.66 0.954912
Target:  5'- --aCCGAacGCCaCUcCCGAAuucGCaGCGCCCc -3'
miRNA:   3'- auaGGCU--UGG-GA-GGCUU---UGcCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 53572 0.72 0.700287
Target:  5'- --gCCGAGCCaCUCUGcGACGGgagUACCCg -3'
miRNA:   3'- auaGGCUUGG-GAGGCuUUGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 41407 0.66 0.958682
Target:  5'- ---aCGAACCuCUCgGAggUGGuCACCg -3'
miRNA:   3'- auagGCUUGG-GAGgCUuuGCC-GUGGg -5'
9768 5' -54.8 NC_002577.1 + 40916 0.7 0.787171
Target:  5'- --aCCGAG-CCUCCGGAACGGggauaGCCg -3'
miRNA:   3'- auaGGCUUgGGAGGCUUUGCCg----UGGg -5'
9768 5' -54.8 NC_002577.1 + 30582 0.66 0.946689
Target:  5'- ---aCGGGCCCgUCGGAuUGGCGCUCg -3'
miRNA:   3'- auagGCUUGGGaGGCUUuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 28000 0.7 0.79625
Target:  5'- aAUCCGGAUUCaguaaCCGAcGCGGCACUg -3'
miRNA:   3'- aUAGGCUUGGGa----GGCUuUGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 26126 0.66 0.94223
Target:  5'- gGUCaCGAGCUCUUCGAAcACuGCACgCg -3'
miRNA:   3'- aUAG-GCUUGGGAGGCUU-UGcCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 21800 0.7 0.787171
Target:  5'- aAUCCcgcGAACCUUCCGGGAUGGaCGCg- -3'
miRNA:   3'- aUAGG---CUUGGGAGGCUUUGCC-GUGgg -5'
9768 5' -54.8 NC_002577.1 + 18735 0.69 0.850502
Target:  5'- aUAUCCGGGCCCaaCUGcAAGCGGUaauucaagcucgaaaACCCc -3'
miRNA:   3'- -AUAGGCUUGGGa-GGC-UUUGCCG---------------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 16175 0.81 0.272033
Target:  5'- --cCUGGACCCUCCGGAcaagGCcgGGCGCCCa -3'
miRNA:   3'- auaGGCUUGGGAGGCUU----UG--CCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 15599 0.67 0.916378
Target:  5'- -uUUCGGccuCCCUCCGAuuccuGACGGCGgCa -3'
miRNA:   3'- auAGGCUu--GGGAGGCU-----UUGCCGUgGg -5'
9768 5' -54.8 NC_002577.1 + 12035 0.68 0.870341
Target:  5'- --cCCGggUCgUcgcCCGGGuCGGCGCCCg -3'
miRNA:   3'- auaGGCuuGGgA---GGCUUuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11936 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11632 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11302 0.67 0.916378
Target:  5'- cGUCCGGGCCaaUCGGgaAGCGGgAUCCu -3'
miRNA:   3'- aUAGGCUUGGgaGGCU--UUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11138 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.