miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 122476 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 5412 0.68 0.898021
Target:  5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3'
miRNA:   3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 18735 0.69 0.850502
Target:  5'- aUAUCCGGGCCCaaCUGcAAGCGGUaauucaagcucgaaaACCCc -3'
miRNA:   3'- -AUAGGCUUGGGa-GGC-UUUGCCG---------------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 134402 0.69 0.855203
Target:  5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3'
miRNA:   3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 134852 0.66 0.954523
Target:  5'- --aCCGGAUCCggaGGAGCGGUuuccgcaGCCCu -3'
miRNA:   3'- auaGGCUUGGGaggCUUUGCCG-------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 132232 0.66 0.958682
Target:  5'- --cCCG-ACCCUCaauccGCGGCACgCCc -3'
miRNA:   3'- auaGGCuUGGGAGgcuu-UGCCGUG-GG- -5'
9768 5' -54.8 NC_002577.1 + 157414 0.66 0.950916
Target:  5'- aGUUCGAuagACCCcggugaggUCCGcAGAgGGCugCCg -3'
miRNA:   3'- aUAGGCU---UGGG--------AGGC-UUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 12035 0.68 0.870341
Target:  5'- --cCCGggUCgUcgcCCGGGuCGGCGCCCg -3'
miRNA:   3'- auaGGCuuGGgA---GGCUUuGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 133247 0.68 0.898021
Target:  5'- --cCCGAgagGCCCUaaccgccaCCGuAAACGGCccugGCCCa -3'
miRNA:   3'- auaGGCU---UGGGA--------GGC-UUUGCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 156287 1.09 0.00404
Target:  5'- gAUCCGAACCCUCCGAAACGGCACCCu -3'
miRNA:   3'- aUAGGCUUGGGAGGCUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 77410 0.68 0.880433
Target:  5'- aUAUCCGAucCCCguguacaacaagagCCGAGACGGCGa-- -3'
miRNA:   3'- -AUAGGCUu-GGGa-------------GGCUUUGCCGUggg -5'
9768 5' -54.8 NC_002577.1 + 76474 0.68 0.877593
Target:  5'- --aCCGGuugACCgCUCCGucgauaucucGCGGCACCUg -3'
miRNA:   3'- auaGGCU---UGG-GAGGCuu--------UGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 128202 0.68 0.898021
Target:  5'- gGUCCGAGCggcucuCCUCUGAuauccCGGCACggCCu -3'
miRNA:   3'- aUAGGCUUG------GGAGGCUuu---GCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 127020 0.68 0.903122
Target:  5'- --cCCGAcgucuCCCUCCGAuucaaaaguacuGCGGCACgaCCu -3'
miRNA:   3'- auaGGCUu----GGGAGGCUu-----------UGCCGUG--GG- -5'
9768 5' -54.8 NC_002577.1 + 10563 0.68 0.904374
Target:  5'- gGUCCGuuucuGCCCUU----GCGGCGCUCu -3'
miRNA:   3'- aUAGGCu----UGGGAGgcuuUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 15599 0.67 0.916378
Target:  5'- -uUUCGGccuCCCUCCGAuuccuGACGGCGgCa -3'
miRNA:   3'- auAGGCUu--GGGAGGCU-----UUGCCGUgGg -5'
9768 5' -54.8 NC_002577.1 + 139996 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 121982 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11138 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 90087 0.66 0.940846
Target:  5'- gGUCC--AUUCUCCGAuAucccacacuacuccCGGCACCCa -3'
miRNA:   3'- aUAGGcuUGGGAGGCUuU--------------GCCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.