miRNA display CGI


Results 41 - 60 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 11302 0.67 0.916378
Target:  5'- cGUCCGGGCCaaUCGGgaAGCGGgAUCCu -3'
miRNA:   3'- aUAGGCUUGGgaGGCU--UUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 78976 0.67 0.927433
Target:  5'- uUGUgCGAGCCCUCCGGccuaAGCcugaGGC-CCg -3'
miRNA:   3'- -AUAgGCUUGGGAGGCU----UUG----CCGuGGg -5'
9768 5' -54.8 NC_002577.1 + 130324 0.67 0.927433
Target:  5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3'
miRNA:   3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 138931 0.67 0.932603
Target:  5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3'
miRNA:   3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139366 0.67 0.932603
Target:  5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3'
miRNA:   3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 159104 0.67 0.934108
Target:  5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3'
miRNA:   3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139996 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 121982 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 136112 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 40916 0.7 0.787171
Target:  5'- --aCCGAG-CCUCCGGAACGGggauaGCCg -3'
miRNA:   3'- auaGGCUUgGGAGGCUUUGCCg----UGGg -5'
9768 5' -54.8 NC_002577.1 + 154677 0.7 0.813956
Target:  5'- -cUCCGAGCCgaaUCaGAAGgGGCugCCg -3'
miRNA:   3'- auAGGCUUGGg--AGgCUUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 130104 0.7 0.822566
Target:  5'- cGUgCGAcgcGCUCUCCGGAuCGGUGCCg -3'
miRNA:   3'- aUAgGCU---UGGGAGGCUUuGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 75259 0.7 0.822566
Target:  5'- cGUUCGAuCCCUCCGAcuUGaGCACUUa -3'
miRNA:   3'- aUAGGCUuGGGAGGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 121678 0.72 0.720229
Target:  5'- gGUCCGcGCCCUCCGgcGucguucucucCGGCGUCCg -3'
miRNA:   3'- aUAGGCuUGGGAGGCuuU----------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 156138 0.73 0.659788
Target:  5'- --gCCGAACCCcCCGA--CGGCGCgCa -3'
miRNA:   3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 4794 0.74 0.598531
Target:  5'- --aCCGcgugcuACCCUCgGAggggggcaugagGACGGCGCCCg -3'
miRNA:   3'- auaGGCu-----UGGGAGgCU------------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 3154 0.76 0.470566
Target:  5'- cGUCUGGACUUUaCCGggGCGGCuucguCCCg -3'
miRNA:   3'- aUAGGCUUGGGA-GGCuuUGCCGu----GGG- -5'
9768 5' -54.8 NC_002577.1 + 159666 0.77 0.416256
Target:  5'- cGUCCGGAcauCCCUCCGggGaCGGUuucgcgucuACCCg -3'
miRNA:   3'- aUAGGCUU---GGGAGGCuuU-GCCG---------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 16175 0.81 0.272033
Target:  5'- --cCUGGACCCUCCGGAcaagGCcgGGCGCCCa -3'
miRNA:   3'- auaGGCUUGGGAGGCUU----UG--CCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 158203 0.66 0.958682
Target:  5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3'
miRNA:   3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.