miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 137370 0.66 0.946689
Target:  5'- ---gCGAACUCUCgCGGcuaauGCGGCgGCCCu -3'
miRNA:   3'- auagGCUUGGGAG-GCUu----UGCCG-UGGG- -5'
9768 5' -54.8 NC_002577.1 + 74324 0.66 0.946689
Target:  5'- -cUCC--GCCCUCUcaAAACGGC-CCCa -3'
miRNA:   3'- auAGGcuUGGGAGGc-UUUGCCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 104819 0.66 0.94223
Target:  5'- cAUUCGAGCCUaUCGAAGacCGGCcagaACCCc -3'
miRNA:   3'- aUAGGCUUGGGaGGCUUU--GCCG----UGGG- -5'
9768 5' -54.8 NC_002577.1 + 26126 0.66 0.94223
Target:  5'- gGUCaCGAGCUCUUCGAAcACuGCACgCg -3'
miRNA:   3'- aUAG-GCUUGGGAGGCUU-UGcCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 90087 0.66 0.940846
Target:  5'- gGUCC--AUUCUCCGAuAucccacacuacuccCGGCACCCa -3'
miRNA:   3'- aUAGGcuUGGGAGGCUuU--------------GCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 11138 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 122476 0.66 0.937535
Target:  5'- --gCCGGcccGCCgUCCGAAagcGCGGgACCg -3'
miRNA:   3'- auaGGCU---UGGgAGGCUU---UGCCgUGGg -5'
9768 5' -54.8 NC_002577.1 + 121982 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 157342 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 11632 0.66 0.936081
Target:  5'- gAUCCGAcggacgcgaucgcgACCCgaccgCUGAucCGcGCGCCCc -3'
miRNA:   3'- aUAGGCU--------------UGGGa----GGCUuuGC-CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139996 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 159104 0.67 0.934108
Target:  5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3'
miRNA:   3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 138234 0.67 0.934108
Target:  5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3'
miRNA:   3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 138931 0.67 0.932603
Target:  5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3'
miRNA:   3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 157971 0.67 0.932603
Target:  5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3'
miRNA:   3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 158407 0.67 0.932603
Target:  5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3'
miRNA:   3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139366 0.67 0.932603
Target:  5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3'
miRNA:   3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 78976 0.67 0.927433
Target:  5'- uUGUgCGAGCCCUCCGGccuaAGCcugaGGC-CCg -3'
miRNA:   3'- -AUAgGCUUGGGAGGCU----UUG----CCGuGGg -5'
9768 5' -54.8 NC_002577.1 + 130324 0.67 0.927433
Target:  5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3'
miRNA:   3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5'
9768 5' -54.8 NC_002577.1 + 3290 0.67 0.927433
Target:  5'- cGUCCGAugCUcUCGAucucaggcagcACGGCACCg -3'
miRNA:   3'- aUAGGCUugGGaGGCUu----------UGCCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.