miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9769 3' -58.2 NC_002577.1 + 82639 0.66 0.841624
Target:  5'- ---gGCCCU---CGaCGCCGGCGUUCGa -3'
miRNA:   3'- ugaaCGGGGauuGC-GUGGCCGCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 41176 0.66 0.841624
Target:  5'- uACgUGCaguCCggaGugGCACCGGCG-CCAc -3'
miRNA:   3'- -UGaACGg--GGa--UugCGUGGCCGCaGGU- -5'
9769 3' -58.2 NC_002577.1 + 162210 0.66 0.833532
Target:  5'- --aUGCCCCgcGCGCACCuuCGcCCGg -3'
miRNA:   3'- ugaACGGGGauUGCGUGGccGCaGGU- -5'
9769 3' -58.2 NC_002577.1 + 135118 0.66 0.833532
Target:  5'- --aUGCCCCgcGCGCACCuuCGcCCGg -3'
miRNA:   3'- ugaACGGGGauUGCGUGGccGCaGGU- -5'
9769 3' -58.2 NC_002577.1 + 91570 0.66 0.825262
Target:  5'- ---cGCCCUUaGACGCGCCGuGCGgcuggCUAc -3'
miRNA:   3'- ugaaCGGGGA-UUGCGUGGC-CGCa----GGU- -5'
9769 3' -58.2 NC_002577.1 + 107609 0.67 0.790553
Target:  5'- aAUUUGCCUUUAguACGacuCCGGCGUCa- -3'
miRNA:   3'- -UGAACGGGGAU--UGCgu-GGCCGCAGgu -5'
9769 3' -58.2 NC_002577.1 + 11930 0.67 0.781509
Target:  5'- ---cGCCCUccGGCGUcguucucuCCGGCGUCCGg -3'
miRNA:   3'- ugaaCGGGGa-UUGCGu-------GGCCGCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 6439 0.67 0.781509
Target:  5'- cACguauCCCUUAuCGCGCCGGcCGUUCAg -3'
miRNA:   3'- -UGaac-GGGGAUuGCGUGGCC-GCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 121684 0.67 0.781509
Target:  5'- ---cGCCCUccGGCGUcguucucuCCGGCGUCCGg -3'
miRNA:   3'- ugaaCGGGGa-UUGCGu-------GGCCGCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 127175 0.67 0.781509
Target:  5'- cACguauCCCUUAuCGCGCCGGcCGUUCAg -3'
miRNA:   3'- -UGaac-GGGGAUuGCGUGGCC-GCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 55758 0.68 0.73451
Target:  5'- gGCUcGUCCCagUAGCGCugCGGCGg-CAg -3'
miRNA:   3'- -UGAaCGGGG--AUUGCGugGCCGCagGU- -5'
9769 3' -58.2 NC_002577.1 + 67544 0.68 0.73451
Target:  5'- --gUGCCaucuCCUGGCGaaGCCGGCGUUCGc -3'
miRNA:   3'- ugaACGG----GGAUUGCg-UGGCCGCAGGU- -5'
9769 3' -58.2 NC_002577.1 + 92600 0.68 0.715045
Target:  5'- --gUGUCCCgaaAACGCGgCGGcCGUCCu -3'
miRNA:   3'- ugaACGGGGa--UUGCGUgGCC-GCAGGu -5'
9769 3' -58.2 NC_002577.1 + 141353 0.68 0.705204
Target:  5'- gGCcgUGCCCCcGACGC-CCGGUcggcagcccGUCCc -3'
miRNA:   3'- -UGa-ACGGGGaUUGCGuGGCCG---------CAGGu -5'
9769 3' -58.2 NC_002577.1 + 155984 0.68 0.705204
Target:  5'- gGCcgUGCCCCcGACGC-CCGGUcggcagcccGUCCc -3'
miRNA:   3'- -UGa-ACGGGGaUUGCGuGGCCG---------CAGGu -5'
9769 3' -58.2 NC_002577.1 + 157891 0.69 0.685353
Target:  5'- uACUggacGCgCCUGACGCAgCGGagucgGUCCAg -3'
miRNA:   3'- -UGAa---CGgGGAUUGCGUgGCCg----CAGGU- -5'
9769 3' -58.2 NC_002577.1 + 136437 0.69 0.685353
Target:  5'- gGCgaGCaCCUGuuuuGCGUACCGGCGcCCGg -3'
miRNA:   3'- -UGaaCGgGGAU----UGCGUGGCCGCaGGU- -5'
9769 3' -58.2 NC_002577.1 + 139447 0.69 0.685353
Target:  5'- uACUggacGCgCCUGACGCAgCGGagucgGUCCAg -3'
miRNA:   3'- -UGAa---CGgGGAUUGCGUgGCCg----CAGGU- -5'
9769 3' -58.2 NC_002577.1 + 160900 0.69 0.685353
Target:  5'- gGCgaGCaCCUGuuuuGCGUACCGGCGcCCGg -3'
miRNA:   3'- -UGaaCGgGGAU----UGCGUGGCCGCaGGU- -5'
9769 3' -58.2 NC_002577.1 + 138137 0.72 0.496838
Target:  5'- --aUGCCCCggAGCGCcugUCGGUGUCCGc -3'
miRNA:   3'- ugaACGGGGa-UUGCGu--GGCCGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.