Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
977 | 5' | -41.5 | NC_000902.1 | + | 53798 | 0.66 | 0.999991 |
Target: 5'- aAACUGGCGGcaaaGUGGACgacaguAACAAc- -3' miRNA: 3'- -UUGACCGCCaa--UAUUUGau----UUGUUua -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 25910 | 0.66 | 0.999986 |
Target: 5'- cGCUGGUGGaUUAaGGACgguGGCAGAg -3' miRNA: 3'- uUGACCGCC-AAUaUUUGau-UUGUUUa -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 52578 | 0.66 | 0.99998 |
Target: 5'- cGCUGGCGG--GUGAAUUGuuCGAu- -3' miRNA: 3'- uUGACCGCCaaUAUUUGAUuuGUUua -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 19743 | 0.66 | 0.99998 |
Target: 5'- cGCUGGgGGgcAUGGGCg--GCAAAUa -3' miRNA: 3'- uUGACCgCCaaUAUUUGauuUGUUUA- -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 45127 | 0.66 | 0.999972 |
Target: 5'- uGGCUGGCGGacgcUGGGCUGAguuccauacgGCAAGg -3' miRNA: 3'- -UUGACCGCCaau-AUUUGAUU----------UGUUUa -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 18305 | 0.67 | 0.99996 |
Target: 5'- cGACUGGCGGUUcgaGGugUGAucCGAAa -3' miRNA: 3'- -UUGACCGCCAAua-UUugAUUu-GUUUa -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 48653 | 0.7 | 0.998529 |
Target: 5'- uGCUGGCGGUgu--GGCUAGAaAGGUg -3' miRNA: 3'- uUGACCGCCAauauUUGAUUUgUUUA- -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 60387 | 0.76 | 0.939261 |
Target: 5'- uAGCUGGCGGUcgggUGUcAACUGAGCcAAAUa -3' miRNA: 3'- -UUGACCGCCA----AUAuUUGAUUUG-UUUA- -5' |
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977 | 5' | -41.5 | NC_000902.1 | + | 60445 | 1.05 | 0.045783 |
Target: 5'- uAACUGGCGGUUAUAAACUAAACAAAUa -3' miRNA: 3'- -UUGACCGCCAAUAUUUGAUUUGUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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