miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9770 3' -50.8 NC_002577.1 + 145059 0.66 0.995602
Target:  5'- cCCGAACUguaUUGacCGCUGCCAUGguCu -3'
miRNA:   3'- aGGCUUGG---AACaaGCGAUGGUGUguG- -5'
9770 3' -50.8 NC_002577.1 + 154726 0.66 0.995392
Target:  5'- -aCGAGCUcUGUUUGCgGCCACgucaacaaagggcgGCACg -3'
miRNA:   3'- agGCUUGGaACAAGCGaUGGUG--------------UGUG- -5'
9770 3' -50.8 NC_002577.1 + 34290 0.66 0.99487
Target:  5'- -aCGAGCCgaaaagauucGUUCGCaGCUACACGg -3'
miRNA:   3'- agGCUUGGaa--------CAAGCGaUGGUGUGUg -5'
9770 3' -50.8 NC_002577.1 + 33164 0.66 0.994713
Target:  5'- cUCCGAGCaucccgGUUCugGCgucuaucaucagACCGCACGCg -3'
miRNA:   3'- -AGGCUUGgaa---CAAG--CGa-----------UGGUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 38492 0.66 0.994044
Target:  5'- cCCGAAUg--GUUCG-UAUCGCGCGCa -3'
miRNA:   3'- aGGCUUGgaaCAAGCgAUGGUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 142660 0.66 0.993956
Target:  5'- cUCCGAGCCgaaucgagaagggGCUGCCGCcgGCACc -3'
miRNA:   3'- -AGGCUUGGaacaag-------CGAUGGUG--UGUG- -5'
9770 3' -50.8 NC_002577.1 + 154677 0.67 0.990012
Target:  5'- cUCCGAGCCgaaucagaagggGCUGCCGCcgGCACc -3'
miRNA:   3'- -AGGCUUGGaacaag------CGAUGGUG--UGUG- -5'
9770 3' -50.8 NC_002577.1 + 128896 0.67 0.988173
Target:  5'- --aGAGCUcgGUUCGCUucGCuCGCGCGCc -3'
miRNA:   3'- aggCUUGGaaCAAGCGA--UG-GUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 4718 0.67 0.988173
Target:  5'- --aGAGCUcgGUUCGCUucGCuCGCGCGCc -3'
miRNA:   3'- aggCUUGGaaCAAGCGA--UG-GUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 56569 0.69 0.960617
Target:  5'- gUCGAugUgcaGUUCGCUGCCAUcaucuGCACc -3'
miRNA:   3'- aGGCUugGaa-CAAGCGAUGGUG-----UGUG- -5'
9770 3' -50.8 NC_002577.1 + 135725 0.72 0.898811
Target:  5'- gUCGGACCUUGUaucggacgUUGCUuCCGCAgCACa -3'
miRNA:   3'- aGGCUUGGAACA--------AGCGAuGGUGU-GUG- -5'
9770 3' -50.8 NC_002577.1 + 160112 0.75 0.764534
Target:  5'- gCCGAACC--GUUCGCguagGCCGCguACACg -3'
miRNA:   3'- aGGCUUGGaaCAAGCGa---UGGUG--UGUG- -5'
9770 3' -50.8 NC_002577.1 + 137226 0.75 0.764534
Target:  5'- gCCGAACC--GUUCGCguagGCCGCguACACg -3'
miRNA:   3'- aGGCUUGGaaCAAGCGa---UGGUG--UGUG- -5'
9770 3' -50.8 NC_002577.1 + 159335 0.75 0.724481
Target:  5'- -gCGAaaucuGCUUUGggCGCUACCGCACAUc -3'
miRNA:   3'- agGCU-----UGGAACaaGCGAUGGUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 138003 0.75 0.724481
Target:  5'- -gCGAaaucuGCUUUGggCGCUACCGCACAUc -3'
miRNA:   3'- agGCU-----UGGAACaaGCGAUGGUGUGUG- -5'
9770 3' -50.8 NC_002577.1 + 154498 1.12 0.00667
Target:  5'- cUCCGAACCUUGUUCGCUACCACACACg -3'
miRNA:   3'- -AGGCUUGGAACAAGCGAUGGUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.