miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9771 5' -62 NC_002577.1 + 157027 0.66 0.704452
Target:  5'- -gGCCCGCCAgCCgGGGAG--CCa-- -3'
miRNA:   3'- ggUGGGCGGUgGGgCCCUCuaGGcau -5'
9771 5' -62 NC_002577.1 + 122389 0.66 0.704452
Target:  5'- gCCGCCCcCCuCCCaCGGGggcGGAUUCGg- -3'
miRNA:   3'- -GGUGGGcGGuGGG-GCCC---UCUAGGCau -5'
9771 5' -62 NC_002577.1 + 11225 0.66 0.704451
Target:  5'- gCCGCCCcCCuCCCaCGGGggcGGAUUCGg- -3'
miRNA:   3'- -GGUGGGcGGuGGG-GCCC---UCUAGGCau -5'
9771 5' -62 NC_002577.1 + 140311 0.66 0.704451
Target:  5'- -gGCCCGCCAgCCgGGGAG--CCa-- -3'
miRNA:   3'- ggUGGGCGGUgGGgCCCUCuaGGcau -5'
9771 5' -62 NC_002577.1 + 57903 0.66 0.666032
Target:  5'- uUCGCCUGgauaauaagguuCCugCUCGGGAGAUuuGUc -3'
miRNA:   3'- -GGUGGGC------------GGugGGGCCCUCUAggCAu -5'
9771 5' -62 NC_002577.1 + 122098 0.67 0.646644
Target:  5'- cUCugCCGCCACCUugcguccguucgCGGGaAGcgCCGg- -3'
miRNA:   3'- -GGugGGCGGUGGG------------GCCC-UCuaGGCau -5'
9771 5' -62 NC_002577.1 + 11516 0.67 0.646644
Target:  5'- cUCugCCGCCACCUugcguccguucgCGGGaAGcgCCGg- -3'
miRNA:   3'- -GGugGGCGGUGGG------------GCCC-UCuaGGCau -5'
9771 5' -62 NC_002577.1 + 122773 0.67 0.636931
Target:  5'- gCCGCCUGCgAUCCCaacGGGAcgGGUUCGUu -3'
miRNA:   3'- -GGUGGGCGgUGGGG---CCCU--CUAGGCAu -5'
9771 5' -62 NC_002577.1 + 10841 0.67 0.636931
Target:  5'- gCCGCCUGCgAUCCCaacGGGAcgGGUUCGUu -3'
miRNA:   3'- -GGUGGGCGgUGGGG---CCCU--CUAGGCAu -5'
9771 5' -62 NC_002577.1 + 119581 0.68 0.540668
Target:  5'- uCCugCCGCCucaaaguuaCCgGGGAGAggUCCGg- -3'
miRNA:   3'- -GGugGGCGGug-------GGgCCCUCU--AGGCau -5'
9771 5' -62 NC_002577.1 + 82087 0.71 0.41579
Target:  5'- gCCGCCCGCCgugaaacaGCCCUGGcGGAUuuGg- -3'
miRNA:   3'- -GGUGGGCGG--------UGGGGCCcUCUAggCau -5'
9771 5' -62 NC_002577.1 + 140024 0.72 0.338158
Target:  5'- gUCGCCCGCUGCCCCaGGAG--CCGg- -3'
miRNA:   3'- -GGUGGGCGGUGGGGcCCUCuaGGCau -5'
9771 5' -62 NC_002577.1 + 157314 0.72 0.338158
Target:  5'- gUCGCCCGCUGCCCCaGGAG--CCGg- -3'
miRNA:   3'- -GGUGGGCGGUGGGGcCCUCuaGGCau -5'
9771 5' -62 NC_002577.1 + 160928 0.74 0.284029
Target:  5'- cCgGCUCGCC-CCCCGGGGGAccCCGg- -3'
miRNA:   3'- -GgUGGGCGGuGGGGCCCUCUa-GGCau -5'
9771 5' -62 NC_002577.1 + 136409 0.74 0.284029
Target:  5'- cCgGCUCGCC-CCCCGGGGGAccCCGg- -3'
miRNA:   3'- -GgUGGGCGGuGGGGCCCUCUa-GGCau -5'
9771 5' -62 NC_002577.1 + 155927 1.07 0.001337
Target:  5'- gCCACCCGCCACCCCGGGAGAUCCGUAc -3'
miRNA:   3'- -GGUGGGCGGUGGGGCCCUCUAGGCAU- -5'
9771 5' -62 NC_002577.1 + 141410 1.07 0.001337
Target:  5'- gCCACCCGCCACCCCGGGAGAUCCGUAc -3'
miRNA:   3'- -GGUGGGCGGUGGGGCCCUCUAGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.