miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9772 3' -56.4 NC_002577.1 + 159061 0.66 0.91147
Target:  5'- -cGCCCG-CCgGCCGCGGcCgcgccGUCc -3'
miRNA:   3'- guCGGGCaGGgCGGUGCCaGauu--UAG- -5'
9772 3' -56.4 NC_002577.1 + 138277 0.66 0.91147
Target:  5'- -cGCCCG-CCgGCCGCGGcCgcgccGUCc -3'
miRNA:   3'- guCGGGCaGGgCGGUGCCaGauu--UAG- -5'
9772 3' -56.4 NC_002577.1 + 158367 0.66 0.90542
Target:  5'- -cGCcgCCGUCaCCGCCGCGGcgCUAc--- -3'
miRNA:   3'- guCG--GGCAG-GGCGGUGCCa-GAUuuag -5'
9772 3' -56.4 NC_002577.1 + 138971 0.66 0.90542
Target:  5'- -cGCcgCCGUCaCCGCCGCGGcgCUAc--- -3'
miRNA:   3'- guCG--GGCAG-GGCGGUGCCa-GAUuuag -5'
9772 3' -56.4 NC_002577.1 + 106815 0.66 0.899137
Target:  5'- gGGCCCGUCCCuGUUAucuCGG-CUGGAa- -3'
miRNA:   3'- gUCGGGCAGGG-CGGU---GCCaGAUUUag -5'
9772 3' -56.4 NC_002577.1 + 34391 0.66 0.892626
Target:  5'- aAGCCCGUCCCGUUuaaGGcUUUAAc-- -3'
miRNA:   3'- gUCGGGCAGGGCGGug-CC-AGAUUuag -5'
9772 3' -56.4 NC_002577.1 + 7283 0.67 0.871757
Target:  5'- uGGUUCGU-CCGCCACGGaagCUGGAa- -3'
miRNA:   3'- gUCGGGCAgGGCGGUGCCa--GAUUUag -5'
9772 3' -56.4 NC_002577.1 + 126331 0.67 0.871757
Target:  5'- uGGUUCGU-CCGCCACGGaagCUGGAa- -3'
miRNA:   3'- gUCGGGCAgGGCGGUGCCa--GAUUUag -5'
9772 3' -56.4 NC_002577.1 + 45798 0.67 0.871757
Target:  5'- -uGCgCGgguUCCCGCCACGGgagCUAuAUUu -3'
miRNA:   3'- guCGgGC---AGGGCGGUGCCa--GAUuUAG- -5'
9772 3' -56.4 NC_002577.1 + 121025 0.67 0.856775
Target:  5'- -cGCUCGUCa-GaCCGCGGUCUAGcUCu -3'
miRNA:   3'- guCGGGCAGggC-GGUGCCAGAUUuAG- -5'
9772 3' -56.4 NC_002577.1 + 160502 0.67 0.840992
Target:  5'- -cGCgCCGUCgagaaCCGCCGCGGgagCUGAuuuUCu -3'
miRNA:   3'- guCG-GGCAG-----GGCGGUGCCa--GAUUu--AG- -5'
9772 3' -56.4 NC_002577.1 + 136835 0.67 0.840992
Target:  5'- -cGCgCCGUCgagaaCCGCCGCGGgagCUGAuuuUCu -3'
miRNA:   3'- guCG-GGCAG-----GGCGGUGCCa--GAUUu--AG- -5'
9772 3' -56.4 NC_002577.1 + 124280 0.68 0.81593
Target:  5'- uGGCCCGgggCgCGgaCGCGGUCUGAGg- -3'
miRNA:   3'- gUCGGGCa--GgGCg-GUGCCAGAUUUag -5'
9772 3' -56.4 NC_002577.1 + 9334 0.68 0.81593
Target:  5'- uGGCCCGgggCgCGgaCGCGGUCUGAGg- -3'
miRNA:   3'- gUCGGGCa--GgGCg-GUGCCAGAUUUag -5'
9772 3' -56.4 NC_002577.1 + 33882 0.68 0.797492
Target:  5'- uGGCCCGUUCuCGCCgagacggaacauuGCGGUg-GAGUCu -3'
miRNA:   3'- gUCGGGCAGG-GCGG-------------UGCCAgaUUUAG- -5'
9772 3' -56.4 NC_002577.1 + 156466 0.7 0.703166
Target:  5'- -cGcCCCGUUCCGaacCCGCGGggaCUAGAUCg -3'
miRNA:   3'- guC-GGGCAGGGC---GGUGCCa--GAUUUAG- -5'
9772 3' -56.4 NC_002577.1 + 140871 0.7 0.703166
Target:  5'- -cGcCCCGUUCCGaacCCGCGGggaCUAGAUCg -3'
miRNA:   3'- guC-GGGCAGGGC---GGUGCCa--GAUUUAG- -5'
9772 3' -56.4 NC_002577.1 + 125825 0.7 0.69317
Target:  5'- gAGCCU-UCCCGCCgcACGGUUcGGAUCc -3'
miRNA:   3'- gUCGGGcAGGGCGG--UGCCAGaUUUAG- -5'
9772 3' -56.4 NC_002577.1 + 53886 0.7 0.69317
Target:  5'- gGGCCCGcCCCGuCCAaucauCGGcCUGAGUUc -3'
miRNA:   3'- gUCGGGCaGGGC-GGU-----GCCaGAUUUAG- -5'
9772 3' -56.4 NC_002577.1 + 7788 0.7 0.69317
Target:  5'- gAGCCU-UCCCGCCgcACGGUUcGGAUCc -3'
miRNA:   3'- gUCGGGcAGGGCGG--UGCCAGaUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.