Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 134392 | 0.67 | 0.953332 |
Target: 5'- ---cGGCGgcgGCaGgGGGuuucGGUCGCCCu -3' miRNA: 3'- cuuaCCGCaa-CG-CgCUUu---CCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 3436 | 0.67 | 0.953332 |
Target: 5'- --uUGuGCugUGUGUGAGAGGUCGUCa -3' miRNA: 3'- cuuAC-CGcaACGCGCUUUCCAGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 162935 | 0.67 | 0.953332 |
Target: 5'- ---cGGCGgcgGCaGgGGGuuucGGUCGCCCu -3' miRNA: 3'- cuuaCCGCaa-CG-CgCUUu---CCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 130178 | 0.67 | 0.953332 |
Target: 5'- --uUGuGCugUGUGUGAGAGGUCGUCa -3' miRNA: 3'- cuuAC-CGcaACGCGCUUUCCAGCGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 118020 | 0.67 | 0.949198 |
Target: 5'- ---cGGCGUaG-GCGAAccugaGGGUgCGCCCc -3' miRNA: 3'- cuuaCCGCAaCgCGCUU-----UCCA-GCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 91800 | 0.67 | 0.949198 |
Target: 5'- ---cGGUcaGUUGUgaauuuGCGAAggcGGGUUGCCCg -3' miRNA: 3'- cuuaCCG--CAACG------CGCUU---UCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 140721 | 0.67 | 0.944828 |
Target: 5'- ---cGGgGggGgGUGggGGGggcaCGCCCg -3' miRNA: 3'- cuuaCCgCaaCgCGCuuUCCa---GCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 156616 | 0.67 | 0.944828 |
Target: 5'- ---cGGgGggGgGUGggGGGggcaCGCCCg -3' miRNA: 3'- cuuaCCgCaaCgCGCuuUCCa---GCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 22099 | 0.68 | 0.930274 |
Target: 5'- ---cGGUaUUGauauGCGucGGGUCGCCCa -3' miRNA: 3'- cuuaCCGcAACg---CGCuuUCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 129315 | 0.68 | 0.919356 |
Target: 5'- cGGUGuccuGUGUUGUGUGAGAGGUC-UCCg -3' miRNA: 3'- cUUAC----CGCAACGCGCUUUCCAGcGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 4299 | 0.68 | 0.919356 |
Target: 5'- cGGUGuccuGUGUUGUGUGAGAGGUC-UCCg -3' miRNA: 3'- cUUAC----CGCAACGCGCUUUCCAGcGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 121691 | 0.68 | 0.913533 |
Target: 5'- ---cGGCGUcGUucucuccgGCGuccGGGUCGCCCc -3' miRNA: 3'- cuuaCCGCAaCG--------CGCuu-UCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 11923 | 0.68 | 0.913533 |
Target: 5'- ---cGGCGUcGUucucuccgGCGuccGGGUCGCCCc -3' miRNA: 3'- cuuaCCGCAaCG--------CGCuu-UCCAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 90999 | 0.69 | 0.901162 |
Target: 5'- uGAUGGCcgcgaaUGCGgGGGAGcGUCGaCCCa -3' miRNA: 3'- cUUACCGca----ACGCgCUUUC-CAGC-GGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 136027 | 0.69 | 0.89462 |
Target: 5'- ---aGGCGUUGCagGUGuuccAGGaCGCCCg -3' miRNA: 3'- cuuaCCGCAACG--CGCuu--UCCaGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 161310 | 0.69 | 0.89462 |
Target: 5'- ---aGGCGUUGCagGUGuuccAGGaCGCCCg -3' miRNA: 3'- cuuaCCGCAACG--CGCuu--UCCaGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 156684 | 0.72 | 0.752397 |
Target: 5'- uGAAUGGUGUUGaGCGAAcGGUC-CCg -3' miRNA: 3'- -CUUACCGCAACgCGCUUuCCAGcGGg -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 129122 | 0.72 | 0.742638 |
Target: 5'- ---cGGCGggGCGCGGGAcuUCGUCCu -3' miRNA: 3'- cuuaCCGCaaCGCGCUUUccAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 4492 | 0.72 | 0.742638 |
Target: 5'- ---cGGCGggGCGCGGGAcuUCGUCCu -3' miRNA: 3'- cuuaCCGCaaCGCGCUUUccAGCGGG- -5' |
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9773 | 3' | -53.7 | NC_002577.1 | + | 140654 | 0.72 | 0.722833 |
Target: 5'- cGAAUGGUGUUGaGCGAAcGGUC-CCg -3' miRNA: 3'- -CUUACCGCAACgCGCUUuCCAGcGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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