miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9773 5' -61.8 NC_002577.1 + 153237 0.66 0.682462
Target:  5'- cGGGAGCuUGcGUCUUCCgGUGgCaCCUgCGa -3'
miRNA:   3'- -UCCUCG-GC-CAGAAGGgCAC-G-GGAgGC- -5'
9773 5' -61.8 NC_002577.1 + 121653 0.66 0.653325
Target:  5'- cGGGucgucGCCcgGGUCcgcgCCCGguccgcGCCCUCCGg -3'
miRNA:   3'- -UCCu----CGG--CCAGaa--GGGCa-----CGGGAGGC- -5'
9773 5' -61.8 NC_002577.1 + 132642 0.66 0.653325
Target:  5'- cGGGAGCCcaucGUCgugcgcUCCCG-GUCCUCuCGg -3'
miRNA:   3'- -UCCUCGGc---CAGa-----AGGGCaCGGGAG-GC- -5'
9773 5' -61.8 NC_002577.1 + 11961 0.66 0.653325
Target:  5'- cGGGucgucGCCcgGGUCcgcgCCCGguccgcGCCCUCCGg -3'
miRNA:   3'- -UCCu----CGG--CCAGaa--GGGCa-----CGGGAGGC- -5'
9773 5' -61.8 NC_002577.1 + 972 0.66 0.653325
Target:  5'- cGGGAGCCcaucGUCgugcgcUCCCG-GUCCUCuCGg -3'
miRNA:   3'- -UCCUCGGc---CAGa-----AGGGCaCGGGAG-GC- -5'
9773 5' -61.8 NC_002577.1 + 157751 0.68 0.57545
Target:  5'- cGGAGCCGGUCUcgggagCCGUGUuaccgCUUCCc -3'
miRNA:   3'- uCCUCGGCCAGAag----GGCACG-----GGAGGc -5'
9773 5' -61.8 NC_002577.1 + 139587 0.68 0.57545
Target:  5'- cGGAGCCGGUCUcgggagCCGUGUuaccgCUUCCc -3'
miRNA:   3'- uCCUCGGCCAGAag----GGCACG-----GGAGGc -5'
9773 5' -61.8 NC_002577.1 + 14391 0.69 0.518387
Target:  5'- cGGAGCCGGUCc-CCCauugaaauagGCCCUCg- -3'
miRNA:   3'- uCCUCGGCCAGaaGGGca--------CGGGAGgc -5'
9773 5' -61.8 NC_002577.1 + 158146 0.71 0.403952
Target:  5'- cAGGGGuUCGGgcugcCUUCCCG-GCCUUCCa -3'
miRNA:   3'- -UCCUC-GGCCa----GAAGGGCaCGGGAGGc -5'
9773 5' -61.8 NC_002577.1 + 139192 0.71 0.403952
Target:  5'- cAGGGGuUCGGgcugcCUUCCCG-GCCUUCCa -3'
miRNA:   3'- -UCCUC-GGCCa----GAAGGGCaCGGGAGGc -5'
9773 5' -61.8 NC_002577.1 + 140010 1.08 0.001125
Target:  5'- cAGGAGCCGGUCUUCCCGUGCCCUCCGa -3'
miRNA:   3'- -UCCUCGGCCAGAAGGGCACGGGAGGC- -5'
9773 5' -61.8 NC_002577.1 + 157328 1.08 0.001125
Target:  5'- cAGGAGCCGGUCUUCCCGUGCCCUCCGa -3'
miRNA:   3'- -UCCUCGGCCAGAAGGGCACGGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.