miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 3' -68.4 NC_002577.1 + 163154 0.68 0.312513
Target:  5'- --cGCCCcC-CCCCC-CCCC-CCCCGa -3'
miRNA:   3'- ucaCGGGcGaGGGGGaGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 124793 0.68 0.30859
Target:  5'- cGUGCCC-CUCCCCCaacuaaCCCUucgcgcgcaccgcggGCCUCGg -3'
miRNA:   3'- uCACGGGcGAGGGGGa-----GGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 8821 0.68 0.30859
Target:  5'- cGUGCCC-CUCCCCCaacuaaCCCUucgcgcgcaccgcggGCCUCGg -3'
miRNA:   3'- uCACGGGcGAGGGGGa-----GGGG---------------CGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 125476 0.68 0.305996
Target:  5'- -cUGCCCGCgCCCgCgCUCCgCGCUCCc -3'
miRNA:   3'- ucACGGGCGaGGG-G-GAGGgGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 8138 0.68 0.305996
Target:  5'- -cUGCCCGCgCCCgCgCUCCgCGCUCCc -3'
miRNA:   3'- ucACGGGCGaGGG-G-GAGGgGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 161251 0.68 0.302137
Target:  5'- aGGUGCaCCGuCUCgCCCCgcagccaaugcuccgUCCgauggccuggCCGCCCCGa -3'
miRNA:   3'- -UCACG-GGC-GAG-GGGG---------------AGG----------GGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 155048 0.68 0.293277
Target:  5'- --cGaCCCGCgCCCCCcCCCCcCCCCc -3'
miRNA:   3'- ucaC-GGGCGaGGGGGaGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 83154 0.68 0.291405
Target:  5'- --aGCCCGUcucguagcgacucgUCCCCUUCCCCcGCUaCCGu -3'
miRNA:   3'- ucaCGGGCG--------------AGGGGGAGGGG-CGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 158716 0.68 0.287074
Target:  5'- --cGUCCGCUUCCuCUUCCUCGUCCUc -3'
miRNA:   3'- ucaCGGGCGAGGG-GGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 138621 0.68 0.287074
Target:  5'- --cGUCCGCUUCCuCUUCCUCGUCCUc -3'
miRNA:   3'- ucaCGGGCGAGGG-GGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 142291 0.68 0.280975
Target:  5'- --cGaCCCGCgcccccCCCCCcCCCCcCCCCGa -3'
miRNA:   3'- ucaC-GGGCGa-----GGGGGaGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 131863 0.69 0.2732
Target:  5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3'
miRNA:   3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 1750 0.69 0.2732
Target:  5'- uGG-GCCCGUUagggcuaggagcgaCCCUCUCCCCcCCCCc -3'
miRNA:   3'- -UCaCGGGCGA--------------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 139230 0.69 0.269085
Target:  5'- aGGUGCCUuucgaaauGCcCCCCC-CgCCCGCCaCCGc -3'
miRNA:   3'- -UCACGGG--------CGaGGGGGaG-GGGCGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 158108 0.69 0.269085
Target:  5'- aGGUGCCUuucgaaauGCcCCCCC-CgCCCGCCaCCGc -3'
miRNA:   3'- -UCACGGG--------CGaGGGGGaG-GGGCGG-GGC- -5'
9774 3' -68.4 NC_002577.1 + 135179 0.69 0.263294
Target:  5'- gAGUGacucccCCCGCcCCCCC-CCCCGaCCUGa -3'
miRNA:   3'- -UCAC------GGGCGaGGGGGaGGGGCgGGGC- -5'
9774 3' -68.4 NC_002577.1 + 101576 0.69 0.262721
Target:  5'- cAGUGCUCGCuaacuuaUCUCCgCUCCCCGacaCCGa -3'
miRNA:   3'- -UCACGGGCG-------AGGGG-GAGGGGCgg-GGC- -5'
9774 3' -68.4 NC_002577.1 + 140907 0.69 0.252017
Target:  5'- cGUGCCC---CCCCCaCCCCcCCCCGa -3'
miRNA:   3'- uCACGGGcgaGGGGGaGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 156431 0.69 0.252017
Target:  5'- cGUGCCC---CCCCCaCCCCcCCCCGa -3'
miRNA:   3'- uCACGGGcgaGGGGGaGGGGcGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 122188 0.69 0.24114
Target:  5'- --cGgCCGuCUCCCCCUUCCCuucCCCCa -3'
miRNA:   3'- ucaCgGGC-GAGGGGGAGGGGc--GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.