miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 5' -54.9 NC_002577.1 + 128993 0.66 0.924104
Target:  5'- gGCCGcggguACGCGCGcCgaguaugGGGggGCGcGUGc -3'
miRNA:   3'- -CGGU-----UGCGCGUaGa------CCCuuCGC-CAUu -5'
9774 5' -54.9 NC_002577.1 + 110330 0.66 0.918458
Target:  5'- uCCGACagaguuaUGCAUCguuucaGGGAGGCGGUAc -3'
miRNA:   3'- cGGUUGc------GCGUAGa-----CCCUUCGCCAUu -5'
9774 5' -54.9 NC_002577.1 + 156340 0.67 0.911963
Target:  5'- cGCCAggagaccccugauGCGCGcCGUCgGGGGguucGGCGGa-- -3'
miRNA:   3'- -CGGU-------------UGCGC-GUAGaCCCU----UCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 140997 0.67 0.911962
Target:  5'- cGCCAggagaccccugauGCGCGcCGUCgGGGGguucGGCGGa-- -3'
miRNA:   3'- -CGGU-------------UGCGC-GUAGaCCCU----UCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 142497 0.67 0.886583
Target:  5'- cCCGACGCGaaUAUCgGGGggGgGGg-- -3'
miRNA:   3'- cGGUUGCGC--GUAGaCCCuuCgCCauu -5'
9774 5' -54.9 NC_002577.1 + 154839 0.67 0.886583
Target:  5'- cCCGACGCGaaUAUCgGGGggGgGGg-- -3'
miRNA:   3'- cGGUUGCGC--GUAGaCCCuuCgCCauu -5'
9774 5' -54.9 NC_002577.1 + 130467 0.67 0.879499
Target:  5'- -aCuGCGCGCGUCUGGacuuuaccGggGCGGc-- -3'
miRNA:   3'- cgGuUGCGCGUAGACC--------CuuCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 3146 0.67 0.879499
Target:  5'- -aCuGCGCGCGUCUGGacuuuaccGggGCGGc-- -3'
miRNA:   3'- cgGuUGCGCGUAGACC--------CuuCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 4620 0.68 0.864657
Target:  5'- gGCCGcggguACGCGCGccgaguaUGGGggGCGcGUGc -3'
miRNA:   3'- -CGGU-----UGCGCGUag-----ACCCuuCGC-CAUu -5'
9774 5' -54.9 NC_002577.1 + 158250 0.69 0.815177
Target:  5'- gGCCGACGauguaGuCGUCUGGGGccAGCaGUAAc -3'
miRNA:   3'- -CGGUUGCg----C-GUAGACCCU--UCGcCAUU- -5'
9774 5' -54.9 NC_002577.1 + 139088 0.69 0.815176
Target:  5'- gGCCGACGauguaGuCGUCUGGGGccAGCaGUAAc -3'
miRNA:   3'- -CGGUUGCg----C-GUAGACCCU--UCGcCAUU- -5'
9774 5' -54.9 NC_002577.1 + 62399 0.69 0.788021
Target:  5'- gGCCGACagauUGCuUCUGGGGgguagGGCGGUAGc -3'
miRNA:   3'- -CGGUUGc---GCGuAGACCCU-----UCGCCAUU- -5'
9774 5' -54.9 NC_002577.1 + 159618 0.71 0.730067
Target:  5'- cGCCAuagGCGCGUAggcuuucCUGaGGGAGCGGa-- -3'
miRNA:   3'- -CGGU---UGCGCGUa------GAC-CCUUCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 106413 0.73 0.565544
Target:  5'- cGCCGGgGCGUAUUaccGGGAAGCGGc-- -3'
miRNA:   3'- -CGGUUgCGCGUAGa--CCCUUCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 137720 0.74 0.535117
Target:  5'- cGCCAAgGCGCGUaggcuuucCUGaGGGAGCGGa-- -3'
miRNA:   3'- -CGGUUgCGCGUA--------GAC-CCUUCGCCauu -5'
9774 5' -54.9 NC_002577.1 + 157539 1.08 0.004243
Target:  5'- uGCCAACGCGCAUCUGGGAAGCGGUAAc -3'
miRNA:   3'- -CGGUUGCGCGUAGACCCUUCGCCAUU- -5'
9774 5' -54.9 NC_002577.1 + 139799 1.08 0.004243
Target:  5'- uGCCAACGCGCAUCUGGGAAGCGGUAAc -3'
miRNA:   3'- -CGGUUGCGCGUAGACCCUUCGCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.