miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 70903 0.68 0.919478
Target:  5'- uGGCGCUGUugcuaaacgucccuGGAACc----UCCGGGACa -3'
miRNA:   3'- -CCGCGACG--------------CCUUGccuuuAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 17575 0.68 0.915454
Target:  5'- uGGCGCgaaaCGG-GCGGAGGUCCGa--- -3'
miRNA:   3'- -CCGCGac--GCCuUGCCUUUAGGCcuug -5'
9775 3' -53.9 NC_002577.1 + 54912 0.68 0.909502
Target:  5'- aGCGCUGCGaguCGcGAGGUCCaaauagucaGGAACg -3'
miRNA:   3'- cCGCGACGCcuuGC-CUUUAGG---------CCUUG- -5'
9775 3' -53.9 NC_002577.1 + 154724 0.68 0.909502
Target:  5'- aGGUGCUGuCGGGucgcgcgaucGCGuGGAcgCCGGuGCg -3'
miRNA:   3'- -CCGCGAC-GCCU----------UGC-CUUuaGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 142612 0.68 0.909502
Target:  5'- aGGUGCUGuCGGGucgcgcgaucGCGuGGAcgCCGGuGCg -3'
miRNA:   3'- -CCGCGAC-GCCU----------UGC-CUUuaGGCCuUG- -5'
9775 3' -53.9 NC_002577.1 + 43205 0.68 0.909502
Target:  5'- uGGuUGC-GCGGAACGGAuAagCGGGAUc -3'
miRNA:   3'- -CC-GCGaCGCCUUGCCUuUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 159759 0.69 0.896887
Target:  5'- cGGCGCUucugcGCGGAcccgACGG---UCCGGGcGCg -3'
miRNA:   3'- -CCGCGA-----CGCCU----UGCCuuuAGGCCU-UG- -5'
9775 3' -53.9 NC_002577.1 + 157758 0.69 0.896887
Target:  5'- gGGUGC-GCGGAGcCGGuc-UCgGGAGCc -3'
miRNA:   3'- -CCGCGaCGCCUU-GCCuuuAGgCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 137578 0.69 0.896887
Target:  5'- cGGCGCUucugcGCGGAcccgACGG---UCCGGGcGCg -3'
miRNA:   3'- -CCGCGA-----CGCCU----UGCCuuuAGGCCU-UG- -5'
9775 3' -53.9 NC_002577.1 + 139580 0.69 0.896887
Target:  5'- gGGUGC-GCGGAGcCGGuc-UCgGGAGCc -3'
miRNA:   3'- -CCGCGaCGCCUU-GCCuuuAGgCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 94727 0.69 0.896887
Target:  5'- uGCGagaaUGCGGAuacCGGAGAagCgCGGAACa -3'
miRNA:   3'- cCGCg---ACGCCUu--GCCUUUa-G-GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 69063 0.69 0.89023
Target:  5'- cGCGUUgGgGGAGCGGAAAaa-GGAGCu -3'
miRNA:   3'- cCGCGA-CgCCUUGCCUUUaggCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 3253 0.69 0.89023
Target:  5'- cGUGCUGgaGGAA-GGAGAuggcgcucuacUCCGGGACg -3'
miRNA:   3'- cCGCGACg-CCUUgCCUUU-----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 130361 0.69 0.89023
Target:  5'- cGUGCUGgaGGAA-GGAGAuggcgcucuacUCCGGGACg -3'
miRNA:   3'- cCGCGACg-CCUUgCCUUU-----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 11680 0.69 0.883344
Target:  5'- cGGaCGCcgagagggaUGCGGAGCGcGAGAg-CGGAGCc -3'
miRNA:   3'- -CC-GCG---------ACGCCUUGC-CUUUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 121934 0.69 0.883344
Target:  5'- cGGaCGCcgagagggaUGCGGAGCGcGAGAg-CGGAGCc -3'
miRNA:   3'- -CC-GCG---------ACGCCUUGC-CUUUagGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 9828 0.69 0.883344
Target:  5'- uGGuCGCUaUGGGAUcGGGAUCCGGAAUc -3'
miRNA:   3'- -CC-GCGAcGCCUUGcCUUUAGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 72464 0.69 0.883344
Target:  5'- uGGCGCUGCuaaaGGcACGGGAa--CGGAAg -3'
miRNA:   3'- -CCGCGACG----CCuUGCCUUuagGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 141026 0.69 0.883344
Target:  5'- gGGgGUucgGCGGAACGGAGAcCCGuauccGAACc -3'
miRNA:   3'- -CCgCGa--CGCCUUGCCUUUaGGC-----CUUG- -5'
9775 3' -53.9 NC_002577.1 + 123785 0.69 0.883344
Target:  5'- uGGuCGCUaUGGGAUcGGGAUCCGGAAUc -3'
miRNA:   3'- -CC-GCGAcGCCUUGcCUUUAGGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.