miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 5' -62.6 NC_002577.1 + 122060 0.67 0.588057
Target:  5'- uCGCuCCCGacggGGCUCUCGUUCgGCGa- -3'
miRNA:   3'- uGCG-GGGUg---CCGAGAGCAGGgCGUgc -5'
9775 5' -62.6 NC_002577.1 + 128205 0.68 0.55936
Target:  5'- aGCGgUCCgaGCGGCUCUCcucugauaUCCCgGCACGg -3'
miRNA:   3'- -UGCgGGG--UGCCGAGAGc-------AGGG-CGUGC- -5'
9775 5' -62.6 NC_002577.1 + 5409 0.68 0.55936
Target:  5'- aGCGgUCCgaGCGGCUCUCcucugauaUCCCgGCACGg -3'
miRNA:   3'- -UGCgGGG--UGCCGAGAGc-------AGGG-CGUGC- -5'
9775 5' -62.6 NC_002577.1 + 26297 0.68 0.549878
Target:  5'- uCGUgaCCGCGGCUUUCGaagCCCGCGg- -3'
miRNA:   3'- uGCGg-GGUGCCGAGAGCa--GGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 132286 0.69 0.494199
Target:  5'- uGCGgUCCGCGGUUCccaagCGUCCUGCGu- -3'
miRNA:   3'- -UGCgGGGUGCCGAGa----GCAGGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 1328 0.69 0.494199
Target:  5'- uGCGgUCCGCGGUUCccaagCGUCCUGCGu- -3'
miRNA:   3'- -UGCgGGGUGCCGAGa----GCAGGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 134887 0.69 0.476205
Target:  5'- aACGCgCCCGCGGg-CUCG-CCgGCGCu -3'
miRNA:   3'- -UGCG-GGGUGCCgaGAGCaGGgCGUGc -5'
9775 5' -62.6 NC_002577.1 + 162440 0.69 0.476205
Target:  5'- aACGCgCCCGCGGg-CUCG-CCgGCGCu -3'
miRNA:   3'- -UGCG-GGGUGCCgaGAGCaGGgCGUGc -5'
9775 5' -62.6 NC_002577.1 + 88857 0.69 0.449843
Target:  5'- aACGUCCCGCGcCUgUUG-CCCGCAUGc -3'
miRNA:   3'- -UGCGGGGUGCcGAgAGCaGGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 121726 0.71 0.391642
Target:  5'- cCGUCCC-CGGCUC-CGcUCUCGCGCu -3'
miRNA:   3'- uGCGGGGuGCCGAGaGC-AGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 11888 0.71 0.391642
Target:  5'- cCGUCCC-CGGCUC-CGcUCUCGCGCu -3'
miRNA:   3'- uGCGGGGuGCCGAGaGC-AGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 141301 0.71 0.353188
Target:  5'- cUGCCCgCGCGGCUCcCGUCgCGgGCa -3'
miRNA:   3'- uGCGGG-GUGCCGAGaGCAGgGCgUGc -5'
9775 5' -62.6 NC_002577.1 + 156037 0.71 0.353188
Target:  5'- cUGCCCgCGCGGCUCcCGUCgCGgGCa -3'
miRNA:   3'- uGCGGG-GUGCCGAGaGCAGgGCgUGc -5'
9775 5' -62.6 NC_002577.1 + 104699 0.72 0.338572
Target:  5'- gACGaUCCGCGGCg-UCGUCCgCGCACGc -3'
miRNA:   3'- -UGCgGGGUGCCGagAGCAGG-GCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 122782 0.73 0.30398
Target:  5'- gACGCCCCAUcGUUCUCGUCCgCGgAUc -3'
miRNA:   3'- -UGCGGGGUGcCGAGAGCAGG-GCgUGc -5'
9775 5' -62.6 NC_002577.1 + 10831 0.73 0.30398
Target:  5'- gACGCCCCAUcGUUCUCGUCCgCGgAUc -3'
miRNA:   3'- -UGCGGGGUGcCGAGAGCAGG-GCgUGc -5'
9775 5' -62.6 NC_002577.1 + 155996 0.73 0.284562
Target:  5'- gACGCCCgGuCGGCagCcCGUCCCGcCACGg -3'
miRNA:   3'- -UGCGGGgU-GCCGa-GaGCAGGGC-GUGC- -5'
9775 5' -62.6 NC_002577.1 + 141341 0.79 0.115869
Target:  5'- gACGCCCgGuCGGCagCcCGUCCCGCACGg -3'
miRNA:   3'- -UGCGGGgU-GCCGa-GaGCAGGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 135247 0.8 0.102339
Target:  5'- aGCGgaaCCCCGCGGCUCgguugCGUUCCGCGCu -3'
miRNA:   3'- -UGC---GGGGUGCCGAGa----GCAGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 162081 0.8 0.099817
Target:  5'- gGCGgaaCCCCGCGGCUCgguugCGUUCCGCGCu -3'
miRNA:   3'- -UGC---GGGGUGCCGAGa----GCAGGGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.