miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9776 3' -54.8 NC_002577.1 + 157012 0.66 0.935586
Target:  5'- aGAGCUcgAgUUGG-UGGCcCGCCaGCCg -3'
miRNA:   3'- -UUCGGuaUgAACUaACCGcGCGG-CGG- -5'
9776 3' -54.8 NC_002577.1 + 59006 0.66 0.925082
Target:  5'- cAGGCCAUAgg-GAaggucgUUGuGgGUGCCGCCg -3'
miRNA:   3'- -UUCGGUAUgaaCU------AAC-CgCGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 144921 0.66 0.913587
Target:  5'- uGGGCCug---UGGUcGGUGUGCCGCa -3'
miRNA:   3'- -UUCGGuaugaACUAaCCGCGCGGCGg -5'
9776 3' -54.8 NC_002577.1 + 115819 0.66 0.913587
Target:  5'- cAGCCAUGCcagGGUUuccucGGCGCucuccaauGCCGCa -3'
miRNA:   3'- uUCGGUAUGaa-CUAA-----CCGCG--------CGGCGg -5'
9776 3' -54.8 NC_002577.1 + 156340 0.67 0.90747
Target:  5'- -cGCCAggagACcccUGAU--GCGCGCCGUCg -3'
miRNA:   3'- uuCGGUa---UGa--ACUAacCGCGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 128560 0.67 0.90747
Target:  5'- cGGCCGaGC---AUcGGCGCGCgCGCCg -3'
miRNA:   3'- uUCGGUaUGaacUAaCCGCGCG-GCGG- -5'
9776 3' -54.8 NC_002577.1 + 140997 0.67 0.90747
Target:  5'- -cGCCAggagACcccUGAU--GCGCGCCGUCg -3'
miRNA:   3'- uuCGGUa---UGa--ACUAacCGCGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 5054 0.67 0.90747
Target:  5'- cGGCCGaGC---AUcGGCGCGCgCGCCg -3'
miRNA:   3'- uUCGGUaUGaacUAaCCGCGCG-GCGG- -5'
9776 3' -54.8 NC_002577.1 + 160130 0.67 0.90747
Target:  5'- aAGGCCcgacgGCUgcaacGcgUGGCGCGCCuucucgcggacGCCg -3'
miRNA:   3'- -UUCGGua---UGAa----CuaACCGCGCGG-----------CGG- -5'
9776 3' -54.8 NC_002577.1 + 137208 0.67 0.90747
Target:  5'- aAGGCCcgacgGCUgcaacGcgUGGCGCGCCuucucgcggacGCCg -3'
miRNA:   3'- -UUCGGua---UGAa----CuaACCGCGCGG-----------CGG- -5'
9776 3' -54.8 NC_002577.1 + 140297 0.68 0.87329
Target:  5'- gGAGCCAcGCUaUGuugUGGCGCGCgGg- -3'
miRNA:   3'- -UUCGGUaUGA-ACua-ACCGCGCGgCgg -5'
9776 3' -54.8 NC_002577.1 + 157041 0.68 0.87329
Target:  5'- gGAGCCAcGCUaUGuugUGGCGCGCgGg- -3'
miRNA:   3'- -UUCGGUaUGA-ACua-ACCGCGCGgCgg -5'
9776 3' -54.8 NC_002577.1 + 21239 0.68 0.872547
Target:  5'- aAAGCgCGUACgauaGAUUGGCgaugcuuaccucuGCGCUGCUc -3'
miRNA:   3'- -UUCG-GUAUGaa--CUAACCG-------------CGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 103726 0.68 0.850062
Target:  5'- cAGCUu--CUuaUGGUaccgggGGCGCGCCGCUa -3'
miRNA:   3'- uUCGGuauGA--ACUAa-----CCGCGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 139355 0.68 0.850062
Target:  5'- -cGCCcgGCggc---GGCGCGCaCGCCg -3'
miRNA:   3'- uuCGGuaUGaacuaaCCGCGCG-GCGG- -5'
9776 3' -54.8 NC_002577.1 + 157983 0.68 0.850062
Target:  5'- -cGCCcgGCggc---GGCGCGCaCGCCg -3'
miRNA:   3'- uuCGGuaUGaacuaaCCGCGCG-GCGG- -5'
9776 3' -54.8 NC_002577.1 + 78650 0.7 0.730971
Target:  5'- ---aCAUACUUGGUgaaGGCGCGgaaauuauCCGCCg -3'
miRNA:   3'- uucgGUAUGAACUAa--CCGCGC--------GGCGG- -5'
9776 3' -54.8 NC_002577.1 + 86413 0.71 0.700596
Target:  5'- uGGGCCAgg---GAUUacGGCGCGCCGUa -3'
miRNA:   3'- -UUCGGUaugaaCUAA--CCGCGCGGCGg -5'
9776 3' -54.8 NC_002577.1 + 157784 0.76 0.420478
Target:  5'- -uGCCGUGCUUuccggcGuGCGCGCCGCCg -3'
miRNA:   3'- uuCGGUAUGAAcuaa--C-CGCGCGGCGG- -5'
9776 3' -54.8 NC_002577.1 + 139553 0.76 0.420478
Target:  5'- -uGCCGUGCUUuccggcGuGCGCGCCGCCg -3'
miRNA:   3'- uuCGGUAUGAAcuaa--C-CGCGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.