miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9778 5' -59.3 NC_002577.1 + 158233 0.66 0.777562
Target:  5'- uCUCGUCCCGCAcgcGCCuacggauucauGGUGCagcagcucgCCGUCg -3'
miRNA:   3'- -GAGCGGGGCGU---CGG-----------UUACGa--------GGCAGg -5'
9778 5' -59.3 NC_002577.1 + 93488 0.67 0.759249
Target:  5'- --aGCCCCGCuGCCGAcuUUCCG-CUa -3'
miRNA:   3'- gagCGGGGCGuCGGUUacGAGGCaGG- -5'
9778 5' -59.3 NC_002577.1 + 123511 0.67 0.711755
Target:  5'- -aCGCCgCGaC-GCCGcgGC-CCGUCCa -3'
miRNA:   3'- gaGCGGgGC-GuCGGUuaCGaGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 134673 0.66 0.812648
Target:  5'- gCUC-CUCCGgAuCCGGUGCggccCCGUCCg -3'
miRNA:   3'- -GAGcGGGGCgUcGGUUACGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 137455 0.66 0.777562
Target:  5'- gCUCGUUCaGCGGCCGGguagacGCgaaaCCGUCCc -3'
miRNA:   3'- -GAGCGGGgCGUCGGUUa-----CGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 3035 0.67 0.711755
Target:  5'- -gCGCUCCGCAGCgc---CUUCGUCCc -3'
miRNA:   3'- gaGCGGGGCGUCGguuacGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 161378 0.66 0.803225
Target:  5'- uUCGCcgcgaaaacCCCGCGGCCGgcgacaucagucuGUGCUgcggaagcaaCGUCCg -3'
miRNA:   3'- gAGCG---------GGGCGUCGGU-------------UACGAg---------GCAGG- -5'
9778 5' -59.3 NC_002577.1 + 4497 0.68 0.692252
Target:  5'- -aCGUaCCGCGcGCCAu--CUCCGUCCa -3'
miRNA:   3'- gaGCGgGGCGU-CGGUuacGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 155778 0.68 0.682424
Target:  5'- -aCGCCCCuGUAaggagcggaucGCCAGUGCUgCCGgcgucgCCa -3'
miRNA:   3'- gaGCGGGG-CGU-----------CGGUUACGA-GGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 154808 0.67 0.731004
Target:  5'- aUUGCCCCGUcGCCucu-CUuuGUCCc -3'
miRNA:   3'- gAGCGGGGCGuCGGuuacGAggCAGG- -5'
9778 5' -59.3 NC_002577.1 + 136077 1.11 0.001072
Target:  5'- uCUCGCCCCGCAGCCAAUGCUCCGUCCg -3'
miRNA:   3'- -GAGCGGGGCGUCGGUUACGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 130578 0.67 0.711755
Target:  5'- -gCGCUCCGCAGCgc---CUUCGUCCc -3'
miRNA:   3'- gaGCGGGGCGUCGguuacGAGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 10103 0.67 0.711755
Target:  5'- -aCGCCgCGaC-GCCGcgGC-CCGUCCa -3'
miRNA:   3'- gaGCGGgGC-GuCGGUuaCGaGGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 60409 0.67 0.731004
Target:  5'- gUCGCCCCGC--CCGAgGCcgCCG-CCg -3'
miRNA:   3'- gAGCGGGGCGucGGUUaCGa-GGCaGG- -5'
9778 5' -59.3 NC_002577.1 + 136270 0.71 0.505931
Target:  5'- -gCGCUgaCCGCGGCCGgcgucAUGUUCCuGUCCc -3'
miRNA:   3'- gaGCGG--GGCGUCGGU-----UACGAGG-CAGG- -5'
9778 5' -59.3 NC_002577.1 + 136596 0.66 0.781167
Target:  5'- aCUC-CCUCGCAcGUCAGcagaagcccagacacUGCUgCGUCCg -3'
miRNA:   3'- -GAGcGGGGCGU-CGGUU---------------ACGAgGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 155796 0.72 0.468903
Target:  5'- -cCGCCCCuacacacaccaCAGCCAcgGCUCCGgcagugCCg -3'
miRNA:   3'- gaGCGGGGc----------GUCGGUuaCGAGGCa-----GG- -5'
9778 5' -59.3 NC_002577.1 + 115403 0.72 0.459862
Target:  5'- cCUCGucaugagcuCCCCGCcGCCGAUGCUCUccCCu -3'
miRNA:   3'- -GAGC---------GGGGCGuCGGUUACGAGGcaGG- -5'
9778 5' -59.3 NC_002577.1 + 159065 0.72 0.442065
Target:  5'- aUgGCgCCCGcCGGCCGcgGCcgcgCCGUCCu -3'
miRNA:   3'- gAgCG-GGGC-GUCGGUuaCGa---GGCAGG- -5'
9778 5' -59.3 NC_002577.1 + 130649 0.73 0.416117
Target:  5'- -aCGCUUCGCGcCCAGU-CUCCGUCCa -3'
miRNA:   3'- gaGCGGGGCGUcGGUUAcGAGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.