miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 5' -49.3 NC_002577.1 + 30565 0.67 0.997672
Target:  5'- -uGAGCAAUG-CCGGgcuguCGGGGuUCGCa -3'
miRNA:   3'- ccUUCGUUGCaGGCUau---GUUCC-AGCG- -5'
9779 5' -49.3 NC_002577.1 + 161105 0.67 0.997672
Target:  5'- gGGggGCGAgcCGggcgCCGGUACGcaaaacAGGugcUCGCc -3'
miRNA:   3'- -CCuuCGUU--GCa---GGCUAUGU------UCC---AGCG- -5'
9779 5' -49.3 NC_002577.1 + 157124 0.67 0.997237
Target:  5'- uGGAAGCccGCGcccCUGGUACGGGGgccccCGCc -3'
miRNA:   3'- -CCUUCGu-UGCa--GGCUAUGUUCCa----GCG- -5'
9779 5' -49.3 NC_002577.1 + 7070 0.67 0.997237
Target:  5'- aGGgcGCcgaGACGUCCGAUG--GGGUUccaGCu -3'
miRNA:   3'- -CCuuCG---UUGCAGGCUAUguUCCAG---CG- -5'
9779 5' -49.3 NC_002577.1 + 126543 0.67 0.997237
Target:  5'- aGGgcGCcgaGACGUCCGAUG--GGGUUccaGCu -3'
miRNA:   3'- -CCuuCG---UUGCAGGCUAUguUCCAG---CG- -5'
9779 5' -49.3 NC_002577.1 + 19071 0.67 0.997237
Target:  5'- aGGAcuGCAGuCGcCCGGgaaACGGGGUCGa -3'
miRNA:   3'- -CCUu-CGUU-GCaGGCUa--UGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 44363 0.67 0.997237
Target:  5'- gGGAGGCuccuCGUCgGGUugGAuGUCGg -3'
miRNA:   3'- -CCUUCGuu--GCAGgCUAugUUcCAGCg -5'
9779 5' -49.3 NC_002577.1 + 140214 0.67 0.997237
Target:  5'- uGGAAGCccGCGcccCUGGUACGGGGgccccCGCc -3'
miRNA:   3'- -CCUUCGu-UGCa--GGCUAUGUUCCa----GCG- -5'
9779 5' -49.3 NC_002577.1 + 62771 0.68 0.996166
Target:  5'- cGGAGCAugGUU--GUGacGGGUCGCa -3'
miRNA:   3'- cCUUCGUugCAGgcUAUguUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 101305 0.68 0.995514
Target:  5'- gGGuuGCGGCucgGUCCGAUGCGggcgaAGGcucCGCa -3'
miRNA:   3'- -CCuuCGUUG---CAGGCUAUGU-----UCCa--GCG- -5'
9779 5' -49.3 NC_002577.1 + 141205 0.68 0.994775
Target:  5'- -cAAGCAcACGUCCuGGUACGgaucucccgGGGUgGCg -3'
miRNA:   3'- ccUUCGU-UGCAGG-CUAUGU---------UCCAgCG- -5'
9779 5' -49.3 NC_002577.1 + 156133 0.68 0.994775
Target:  5'- -cAAGCAcACGUCCuGGUACGgaucucccgGGGUgGCg -3'
miRNA:   3'- ccUUCGU-UGCAGG-CUAUGU---------UCCAgCG- -5'
9779 5' -49.3 NC_002577.1 + 46982 0.68 0.99394
Target:  5'- -cGGGCcGCGUCCGAUGUAAGGacuaaUUGCc -3'
miRNA:   3'- ccUUCGuUGCAGGCUAUGUUCC-----AGCG- -5'
9779 5' -49.3 NC_002577.1 + 99140 0.68 0.993001
Target:  5'- gGGggGCuagAACGUcgaCCGAgGCG-GGUCGUu -3'
miRNA:   3'- -CCuuCG---UUGCA---GGCUaUGUuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 10660 0.69 0.992384
Target:  5'- uGggGCGuccucccucgACGUCCGAcgguuccggacgccGCgAGGGUCGCg -3'
miRNA:   3'- cCuuCGU----------UGCAGGCUa-------------UG-UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 122954 0.69 0.992384
Target:  5'- uGggGCGuccucccucgACGUCCGAcgguuccggacgccGCgAGGGUCGCg -3'
miRNA:   3'- cCuuCGU----------UGCAGGCUa-------------UG-UUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 140775 0.69 0.991837
Target:  5'- cGGcGAGCGGCGUgcaggcgCCGGUgggcuuACAGGG-CGCg -3'
miRNA:   3'- -CC-UUCGUUGCA-------GGCUA------UGUUCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 156562 0.69 0.991837
Target:  5'- cGGcGAGCGGCGUgcaggcgCCGGUgggcuuACAGGG-CGCg -3'
miRNA:   3'- -CC-UUCGUUGCA-------GGCUA------UGUUCCaGCG- -5'
9779 5' -49.3 NC_002577.1 + 162073 0.69 0.990776
Target:  5'- aGGggGcCGGCGgaaccCCGcgGCucGGUUGCg -3'
miRNA:   3'- -CCuuC-GUUGCa----GGCuaUGuuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 11052 0.69 0.989472
Target:  5'- gGGggGCGGCGUuucuagcccCCGGcGCG-GGcCGCg -3'
miRNA:   3'- -CCuuCGUUGCA---------GGCUaUGUuCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.