miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9780 3' -53.3 NC_002577.1 + 28945 0.66 0.978793
Target:  5'- aUCGGgCCCGAUggag-GGCUGGGu-- -3'
miRNA:   3'- -GGCCgGGGCUGaaaaaUCGACCUcuc -5'
9780 3' -53.3 NC_002577.1 + 158080 0.66 0.971052
Target:  5'- gUCGGCCCCGACgugc-GGCccGGcuucGAGg -3'
miRNA:   3'- -GGCCGGGGCUGaaaaaUCGa-CCu---CUC- -5'
9780 3' -53.3 NC_002577.1 + 139258 0.66 0.971052
Target:  5'- gUCGGCCCCGACgugc-GGCccGGcuucGAGg -3'
miRNA:   3'- -GGCCGGGGCUGaaaaaUCGa-CCu---CUC- -5'
9780 3' -53.3 NC_002577.1 + 1005 0.67 0.960401
Target:  5'- aUGGCCgaguccgccacaCCGGCUUUUUggaauuucgcggggGGCUGGcGGAGa -3'
miRNA:   3'- gGCCGG------------GGCUGAAAAA--------------UCGACC-UCUC- -5'
9780 3' -53.3 NC_002577.1 + 132608 0.67 0.960401
Target:  5'- aUGGCCgaguccgccacaCCGGCUUUUUggaauuucgcggggGGCUGGcGGAGa -3'
miRNA:   3'- gGCCGG------------GGCUGAAAAA--------------UCGACC-UCUC- -5'
9780 3' -53.3 NC_002577.1 + 5496 0.67 0.953972
Target:  5'- gCgGGCCCCGGauaggUUUcucGGUUGGGGAc -3'
miRNA:   3'- -GgCCGGGGCUgaa--AAA---UCGACCUCUc -5'
9780 3' -53.3 NC_002577.1 + 128118 0.67 0.953972
Target:  5'- gCgGGCCCCGGauaggUUUcucGGUUGGGGAc -3'
miRNA:   3'- -GgCCGGGGCUgaa--AAA---UCGACCUCUc -5'
9780 3' -53.3 NC_002577.1 + 124118 0.69 0.902233
Target:  5'- cUCGGUCCCGcACg----GGCUuGGGGGGg -3'
miRNA:   3'- -GGCCGGGGC-UGaaaaaUCGA-CCUCUC- -5'
9780 3' -53.3 NC_002577.1 + 9496 0.69 0.902233
Target:  5'- cUCGGUCCCGcACg----GGCUuGGGGGGg -3'
miRNA:   3'- -GGCCGGGGC-UGaaaaaUCGA-CCUCUC- -5'
9780 3' -53.3 NC_002577.1 + 156667 0.69 0.895735
Target:  5'- aCGGUCCCGGCg--UcAGC-GGAGAa -3'
miRNA:   3'- gGCCGGGGCUGaaaAaUCGaCCUCUc -5'
9780 3' -53.3 NC_002577.1 + 140671 0.69 0.895735
Target:  5'- aCGGUCCCGGCguc--AGC-GGAGAa -3'
miRNA:   3'- gGCCGGGGCUGaaaaaUCGaCCUCUc -5'
9780 3' -53.3 NC_002577.1 + 14564 0.7 0.874852
Target:  5'- aCCGGCUCCGGaugaUUgugUUAGC-GGGGAu -3'
miRNA:   3'- -GGCCGGGGCUg---AAa--AAUCGaCCUCUc -5'
9780 3' -53.3 NC_002577.1 + 35382 0.74 0.684238
Target:  5'- gCCGcGCCCCGGCUUUcUGGCUuuGAGGu -3'
miRNA:   3'- -GGC-CGGGGCUGAAAaAUCGAc-CUCUc -5'
9780 3' -53.3 NC_002577.1 + 161539 1.11 0.004696
Target:  5'- cCCGGCCCCGACUUUUUAGCUGGAGAGu -3'
miRNA:   3'- -GGCCGGGGCUGAAAAAUCGACCUCUC- -5'
9780 3' -53.3 NC_002577.1 + 135799 1.11 0.004696
Target:  5'- cCCGGCCCCGACUUUUUAGCUGGAGAGu -3'
miRNA:   3'- -GGCCGGGGCUGAAAAAUCGACCUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.