miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9780 5' -58.3 NC_002577.1 + 11766 0.66 0.829606
Target:  5'- cCGCCGGGCCGgUCggaCGGGagaagaagGGGGAg- -3'
miRNA:   3'- -GUGGCUCGGCgAGa--GUUCa-------CCCCUga -5'
9780 5' -58.3 NC_002577.1 + 121847 0.66 0.829606
Target:  5'- cCGCCGGGCCGgUCggaCGGGagaagaagGGGGAg- -3'
miRNA:   3'- -GUGGCUCGGCgAGa--GUUCa-------CCCCUga -5'
9780 5' -58.3 NC_002577.1 + 29020 0.66 0.829606
Target:  5'- aCGCCG-GCCGCUCUUuauAGUGaagaGGugUu -3'
miRNA:   3'- -GUGGCuCGGCGAGAGu--UCACc---CCugA- -5'
9780 5' -58.3 NC_002577.1 + 5109 0.66 0.821271
Target:  5'- -cCCGuGCCGCUCccCGucGUGuGGGACa -3'
miRNA:   3'- guGGCuCGGCGAGa-GUu-CAC-CCCUGa -5'
9780 5' -58.3 NC_002577.1 + 128505 0.66 0.821271
Target:  5'- -cCCGuGCCGCUCccCGucGUGuGGGACa -3'
miRNA:   3'- guGGCuCGGCGAGa-GUu-CAC-CCCUGa -5'
9780 5' -58.3 NC_002577.1 + 142659 0.66 0.821271
Target:  5'- -uCCGAGCCGaa-UCGAGaaGGGGCUg -3'
miRNA:   3'- guGGCUCGGCgagAGUUCacCCCUGA- -5'
9780 5' -58.3 NC_002577.1 + 157453 0.67 0.786348
Target:  5'- gGCCGguAGUCGCUgUCGAGUaaaGGGGcCUc -3'
miRNA:   3'- gUGGC--UCGGCGAgAGUUCA---CCCCuGA- -5'
9780 5' -58.3 NC_002577.1 + 139884 0.67 0.786348
Target:  5'- gGCCGguAGUCGCUgUCGAGUaaaGGGGcCUc -3'
miRNA:   3'- gUGGC--UCGGCGAgAGUUCA---CCCCuGA- -5'
9780 5' -58.3 NC_002577.1 + 42735 0.67 0.783636
Target:  5'- gGCCGAGCCGCUgUCAGGUcaagcacguagaccGcGGAa- -3'
miRNA:   3'- gUGGCUCGGCGAgAGUUCA--------------CcCCUga -5'
9780 5' -58.3 NC_002577.1 + 16562 0.67 0.768049
Target:  5'- aGCCGaAGUCGgUCUgGagaccggaGGUGGGGACc -3'
miRNA:   3'- gUGGC-UCGGCgAGAgU--------UCACCCCUGa -5'
9780 5' -58.3 NC_002577.1 + 114521 0.67 0.748333
Target:  5'- gCACCGAacgggacagccacGCCGUUCUgcUggGUuuuGGGGGCUg -3'
miRNA:   3'- -GUGGCU-------------CGGCGAGA--GuuCA---CCCCUGA- -5'
9780 5' -58.3 NC_002577.1 + 157187 0.68 0.710625
Target:  5'- aACuCGAGCUcUUCUCGAGggGGGGAUg -3'
miRNA:   3'- gUG-GCUCGGcGAGAGUUCa-CCCCUGa -5'
9780 5' -58.3 NC_002577.1 + 140151 0.68 0.710625
Target:  5'- aACuCGAGCUcUUCUCGAGggGGGGAUg -3'
miRNA:   3'- gUG-GCUCGGcGAGAGUUCa-CCCCUGa -5'
9780 5' -58.3 NC_002577.1 + 114110 0.69 0.680923
Target:  5'- aACCGAGCgGCUCaUAAGgcucGGcGGACa -3'
miRNA:   3'- gUGGCUCGgCGAGaGUUCa---CC-CCUGa -5'
9780 5' -58.3 NC_002577.1 + 135764 1.08 0.002292
Target:  5'- cCACCGAGCCGCUCUCAAGUGGGGACUg -3'
miRNA:   3'- -GUGGCUCGGCGAGAGUUCACCCCUGA- -5'
9780 5' -58.3 NC_002577.1 + 161574 1.08 0.002292
Target:  5'- cCACCGAGCCGCUCUCAAGUGGGGACUg -3'
miRNA:   3'- -GUGGCUCGGCGAGAGUUCACCCCUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.