Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9781 | 3' | -51.9 | NC_002577.1 | + | 134013 | 0.81 | 0.358245 |
Target: 5'- -uGUCGAC---UGCGcGCAUGCGCGCa -3' miRNA: 3'- guCAGCUGuaaACGCuCGUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 140087 | 0.68 | 0.965581 |
Target: 5'- -cGUCGcGCcgUcGCGAGCccccGCGCGCc -3' miRNA: 3'- guCAGC-UGuaAaCGCUCGua--CGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 111348 | 0.69 | 0.946111 |
Target: 5'- aAGaCGuCAUUUGCGAGaCGUGacCGUGCg -3' miRNA: 3'- gUCaGCuGUAAACGCUC-GUAC--GCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 27477 | 0.71 | 0.874239 |
Target: 5'- gAGcCGACAauUUaaUGUGGGCuagGUGCGCGCc -3' miRNA: 3'- gUCaGCUGU--AA--ACGCUCG---UACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 140764 | 0.72 | 0.842692 |
Target: 5'- --uUCGACAcagacgGCGAGCG-GCGUGCa -3' miRNA: 3'- gucAGCUGUaaa---CGCUCGUaCGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 8480 | 0.73 | 0.780066 |
Target: 5'- -uGUgGGgGUgugUGUGGGUGUGCGCGCg -3' miRNA: 3'- guCAgCUgUAa--ACGCUCGUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 80829 | 0.66 | 0.987177 |
Target: 5'- aGGUCGGCAaUuuacguuggaUGUGGGgguccguaaCAUGCGCGUg -3' miRNA: 3'- gUCAGCUGUaA----------ACGCUC---------GUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 23353 | 0.66 | 0.983669 |
Target: 5'- cCGGUCGuCAgaaGCGAGCGcucuaugcagGCGuCGCg -3' miRNA: 3'- -GUCAGCuGUaaaCGCUCGUa---------CGC-GCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 23716 | 0.67 | 0.971764 |
Target: 5'- -uGUC-ACgAUUUGCGGauGCAUGCgGCGCu -3' miRNA: 3'- guCAGcUG-UAAACGCU--CGUACG-CGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 132096 | 0.68 | 0.965581 |
Target: 5'- aCGGaaaCGGCGgaugUGCGcGCAUGCGCucGCg -3' miRNA: 3'- -GUCa--GCUGUaa--ACGCuCGUACGCG--CG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 1308 | 0.72 | 0.850899 |
Target: 5'- -cGUCuGGCucgcgcGCGAGCGcaUGCGCGCa -3' miRNA: 3'- guCAG-CUGuaaa--CGCUCGU--ACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 163192 | 0.79 | 0.445759 |
Target: 5'- ---gCGGCGgacccuaGCGAGCAUGCGCGCg -3' miRNA: 3'- gucaGCUGUaaa----CGCUCGUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 82093 | 0.67 | 0.979478 |
Target: 5'- gCAGUUGuuACGggcgGCgGGGCcUGCGCGCc -3' miRNA: 3'- -GUCAGC--UGUaaa-CG-CUCGuACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 136996 | 0.77 | 0.574912 |
Target: 5'- -cGUCGGCGUccGCGAGaagGCGCGCc -3' miRNA: 3'- guCAGCUGUAaaCGCUCguaCGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 157771 | 0.68 | 0.950483 |
Target: 5'- gCGGcUCGugGUcUGCcgugcuuuccGGCGUGCGCGCc -3' miRNA: 3'- -GUC-AGCugUAaACGc---------UCGUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 141825 | 0.67 | 0.979478 |
Target: 5'- --cUCGACAcgcuccUGCGAGCGacUGUGCGg -3' miRNA: 3'- gucAGCUGUaa----ACGCUCGU--ACGCGCg -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 10802 | 0.66 | 0.987177 |
Target: 5'- gUAGaCGACGUUcuCGGGacgGCGCGCg -3' miRNA: 3'- -GUCaGCUGUAAacGCUCguaCGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 119365 | 0.75 | 0.679609 |
Target: 5'- aCAGUCGugucuuuCAUUUGCaAGUGUGgGCGCg -3' miRNA: 3'- -GUCAGCu------GUAAACGcUCGUACgCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 163142 | 1.13 | 0.004211 |
Target: 5'- gCAGUCGACAUUUGCGAGCAUGCGCGCg -3' miRNA: 3'- -GUCAGCUGUAAACGCUCGUACGCGCG- -5' |
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9781 | 3' | -51.9 | NC_002577.1 | + | 156573 | 0.72 | 0.842692 |
Target: 5'- --uUCGACAcagacgGCGAGCG-GCGUGCa -3' miRNA: 3'- gucAGCUGUaaa---CGCUCGUaCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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