miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9781 3' -51.9 NC_002577.1 + 111348 0.69 0.946111
Target:  5'- aAGaCGuCAUUUGCGAGaCGUGacCGUGCg -3'
miRNA:   3'- gUCaGCuGUAAACGCUC-GUAC--GCGCG- -5'
9781 3' -51.9 NC_002577.1 + 46872 0.69 0.946111
Target:  5'- uCAGUCG-CA--UGCGucuGCAcGCGUGCu -3'
miRNA:   3'- -GUCAGCuGUaaACGCu--CGUaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 81228 0.69 0.926136
Target:  5'- uGGUCuACAU---CGGGCAgUGCGCGCg -3'
miRNA:   3'- gUCAGcUGUAaacGCUCGU-ACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 27477 0.71 0.874239
Target:  5'- gAGcCGACAauUUaaUGUGGGCuagGUGCGCGCc -3'
miRNA:   3'- gUCaGCUGU--AA--ACGCUCG---UACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 132306 0.72 0.850899
Target:  5'- -cGUCuGGCucgcgcGCGAGCGcaUGCGCGCa -3'
miRNA:   3'- guCAG-CUGuaaa--CGCUCGU--ACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 1308 0.72 0.850899
Target:  5'- -cGUCuGGCucgcgcGCGAGCGcaUGCGCGCa -3'
miRNA:   3'- guCAG-CUGuaaa--CGCUCGU--ACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 156573 0.72 0.842692
Target:  5'- --uUCGACAcagacgGCGAGCG-GCGUGCa -3'
miRNA:   3'- gucAGCUGUaaa---CGCUCGUaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 140764 0.72 0.842692
Target:  5'- --uUCGACAcagacgGCGAGCG-GCGUGCa -3'
miRNA:   3'- gucAGCUGUaaa---CGCUCGUaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 8480 0.73 0.780066
Target:  5'- -uGUgGGgGUgugUGUGGGUGUGCGCGCg -3'
miRNA:   3'- guCAgCUgUAa--ACGCUCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 125134 0.73 0.780066
Target:  5'- -uGUgGGgGUgugUGUGGGUGUGCGCGCg -3'
miRNA:   3'- guCAgCUgUAa--ACGCUCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 119365 0.75 0.679609
Target:  5'- aCAGUCGugucuuuCAUUUGCaAGUGUGgGCGCg -3'
miRNA:   3'- -GUCAGCu------GUAAACGcUCGUACgCGCG- -5'
9781 3' -51.9 NC_002577.1 + 136996 0.77 0.574912
Target:  5'- -cGUCGGCGUccGCGAGaagGCGCGCc -3'
miRNA:   3'- guCAGCUGUAaaCGCUCguaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 160341 0.77 0.574912
Target:  5'- -cGUCGGCGUccGCGAGaagGCGCGCc -3'
miRNA:   3'- guCAGCUGUAaaCGCUCguaCGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 134136 0.79 0.445759
Target:  5'- ---gCGGCGgacccuaGCGAGCAUGCGCGCg -3'
miRNA:   3'- gucaGCUGUaaa----CGCUCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 163192 0.79 0.445759
Target:  5'- ---gCGGCGgacccuaGCGAGCAUGCGCGCg -3'
miRNA:   3'- gucaGCUGUaaa----CGCUCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 134013 0.81 0.358245
Target:  5'- -uGUCGAC---UGCGcGCAUGCGCGCa -3'
miRNA:   3'- guCAGCUGuaaACGCuCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 163314 0.81 0.358245
Target:  5'- -uGUCGAC---UGCGcGCAUGCGCGCa -3'
miRNA:   3'- guCAGCUGuaaACGCuCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 163142 1.13 0.004211
Target:  5'- gCAGUCGACAUUUGCGAGCAUGCGCGCg -3'
miRNA:   3'- -GUCAGCUGUAAACGCUCGUACGCGCG- -5'
9781 3' -51.9 NC_002577.1 + 134186 1.13 0.004211
Target:  5'- gCAGUCGACAUUUGCGAGCAUGCGCGCg -3'
miRNA:   3'- -GUCAGCUGUAAACGCUCGUACGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.