miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9781 5' -62.5 NC_002577.1 + 77505 0.66 0.629887
Target:  5'- -uGCGGGCAUuCGCGUGGaaaCGGGCgCg -3'
miRNA:   3'- auCGCUCGUAcGCGCGCC---GCCUGgGa -5'
9781 5' -62.5 NC_002577.1 + 7919 0.66 0.617041
Target:  5'- cGGCGAGUcgGCGgagaaaagguggauCGCGaGCGcGAUCCg -3'
miRNA:   3'- aUCGCUCGuaCGC--------------GCGC-CGC-CUGGGa -5'
9781 5' -62.5 NC_002577.1 + 125695 0.66 0.617041
Target:  5'- cGGCGAGUcgGCGgagaaaagguggauCGCGaGCGcGAUCCg -3'
miRNA:   3'- aUCGCUCGuaCGC--------------GCGC-CGC-CUGGGa -5'
9781 5' -62.5 NC_002577.1 + 102057 0.66 0.610131
Target:  5'- gUGGaCGuGC-UGCGCGUGGCGaagcaGCCCa -3'
miRNA:   3'- -AUC-GCuCGuACGCGCGCCGCc----UGGGa -5'
9781 5' -62.5 NC_002577.1 + 163232 0.66 0.58063
Target:  5'- cGGCGGGgAUgcaGCGUGCGGCucGGCCUa -3'
miRNA:   3'- aUCGCUCgUA---CGCGCGCCGc-CUGGGa -5'
9781 5' -62.5 NC_002577.1 + 134096 0.66 0.58063
Target:  5'- cGGCGGGgAUgcaGCGUGCGGCucGGCCUa -3'
miRNA:   3'- aUCGCUCgUA---CGCGCGCCGc-CUGGGa -5'
9781 5' -62.5 NC_002577.1 + 121570 0.67 0.551437
Target:  5'- cGGCGGGCAUcuuguaccGCGCGCucGGCGcGCCg- -3'
miRNA:   3'- aUCGCUCGUA--------CGCGCG--CCGCcUGGga -5'
9781 5' -62.5 NC_002577.1 + 79421 0.67 0.532223
Target:  5'- -cGCGAGCAgcacuaucuCGgGCGGCGGcaaACCCc -3'
miRNA:   3'- auCGCUCGUac-------GCgCGCCGCC---UGGGa -5'
9781 5' -62.5 NC_002577.1 + 16933 0.68 0.503875
Target:  5'- -cGUGAGaCGcucGCuGCGCGGCaGGGCCCa -3'
miRNA:   3'- auCGCUC-GUa--CG-CGCGCCG-CCUGGGa -5'
9781 5' -62.5 NC_002577.1 + 125789 0.68 0.494571
Target:  5'- cGGCGcuucuGCGUcUGCGCGGCGGACauaCg -3'
miRNA:   3'- aUCGCu----CGUAcGCGCGCCGCCUGg--Ga -5'
9781 5' -62.5 NC_002577.1 + 7825 0.68 0.494571
Target:  5'- cGGCGcuucuGCGUcUGCGCGGCGGACauaCg -3'
miRNA:   3'- aUCGCu----CGUAcGCGCGCCGCCUGg--Ga -5'
9781 5' -62.5 NC_002577.1 + 152781 0.69 0.440526
Target:  5'- --cCGAGCGUGCG-GCGGCaauuuccaGGACCUg -3'
miRNA:   3'- aucGCUCGUACGCgCGCCG--------CCUGGGa -5'
9781 5' -62.5 NC_002577.1 + 35981 0.69 0.438781
Target:  5'- -uGCGAGcCGUaaaaaugaaugccucGCGCGCGGCGGGaguuuagucgacgccCCCUu -3'
miRNA:   3'- auCGCUC-GUA---------------CGCGCGCCGCCU---------------GGGA- -5'
9781 5' -62.5 NC_002577.1 + 156562 0.71 0.350893
Target:  5'- cGGCGAGCGgcgugcagGCGC-CGGUGGGCUUa -3'
miRNA:   3'- aUCGCUCGUa-------CGCGcGCCGCCUGGGa -5'
9781 5' -62.5 NC_002577.1 + 140775 0.71 0.350893
Target:  5'- cGGCGAGCGgcgugcagGCGC-CGGUGGGCUUa -3'
miRNA:   3'- aUCGCUCGUa-------CGCGcGCCGCCUGGGa -5'
9781 5' -62.5 NC_002577.1 + 102461 0.71 0.343414
Target:  5'- cGGCGcGCAaugcGCGCGCGGUaGGGCCUc -3'
miRNA:   3'- aUCGCuCGUa---CGCGCGCCG-CCUGGGa -5'
9781 5' -62.5 NC_002577.1 + 163265 0.71 0.314655
Target:  5'- cUAGCGAGCGcccGCGCGgcCGGCGGGCa-- -3'
miRNA:   3'- -AUCGCUCGUa--CGCGC--GCCGCCUGgga -5'
9781 5' -62.5 NC_002577.1 + 134063 0.71 0.314655
Target:  5'- cUAGCGAGCGcccGCGCGgcCGGCGGGCa-- -3'
miRNA:   3'- -AUCGCUCGUa--CGCGC--GCCGCCUGgga -5'
9781 5' -62.5 NC_002577.1 + 125122 0.72 0.287755
Target:  5'- -uGUGGGUGUGCGCGCGGCcgGGACg-- -3'
miRNA:   3'- auCGCUCGUACGCGCGCCG--CCUGgga -5'
9781 5' -62.5 NC_002577.1 + 8492 0.72 0.287755
Target:  5'- -uGUGGGUGUGCGCGCGGCcgGGACg-- -3'
miRNA:   3'- auCGCUCGUACGCGCGCCG--CCUGgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.