miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9789 5' -50.5 NC_002593.1 + 69284 0.66 0.982811
Target:  5'- aGACGuCUgagCGUGGCCGCgGCC--CACc -3'
miRNA:   3'- -CUGUuGAa--GCACUGGUGgUGGuuGUG- -5'
9789 5' -50.5 NC_002593.1 + 99406 0.66 0.980629
Target:  5'- aGACGACg--GUGACCAaaACCAAuUACa -3'
miRNA:   3'- -CUGUUGaagCACUGGUggUGGUU-GUG- -5'
9789 5' -50.5 NC_002593.1 + 98485 0.66 0.978247
Target:  5'- uGAUcGCccauaGUGGgCACCACCAGCAUc -3'
miRNA:   3'- -CUGuUGaag--CACUgGUGGUGGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 34914 0.66 0.978247
Target:  5'- uGCGAC-UCGUaauCCACCugCAACGg -3'
miRNA:   3'- cUGUUGaAGCAcu-GGUGGugGUUGUg -5'
9789 5' -50.5 NC_002593.1 + 57992 0.67 0.967871
Target:  5'- aACAACUcuggaaugguugaauUUGUGGCguCgACCAGCGCg -3'
miRNA:   3'- cUGUUGA---------------AGCACUGguGgUGGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 15036 0.67 0.966533
Target:  5'- aGGCAcACcUUGUGACCGCaCGgCAGCAUc -3'
miRNA:   3'- -CUGU-UGaAGCACUGGUG-GUgGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 70472 0.67 0.963017
Target:  5'- aGCGACUgca-GGCCACCAUCAACu- -3'
miRNA:   3'- cUGUUGAagcaCUGGUGGUGGUUGug -5'
9789 5' -50.5 NC_002593.1 + 20620 0.67 0.963017
Target:  5'- cGAUAA---UGUGACCccGCCACCuACACa -3'
miRNA:   3'- -CUGUUgaaGCACUGG--UGGUGGuUGUG- -5'
9789 5' -50.5 NC_002593.1 + 30555 0.67 0.959252
Target:  5'- aGACAGCUgCGUGACCGgCAugucgagcUCGACGa -3'
miRNA:   3'- -CUGUUGAaGCACUGGUgGU--------GGUUGUg -5'
9789 5' -50.5 NC_002593.1 + 16659 0.67 0.955231
Target:  5'- aAUAACUgcaGUGugCACUugCAGCAa -3'
miRNA:   3'- cUGUUGAag-CACugGUGGugGUUGUg -5'
9789 5' -50.5 NC_002593.1 + 38194 0.68 0.950949
Target:  5'- cACGAguCUgguaGUGgcacgaGCCACCACCGACACc -3'
miRNA:   3'- cUGUU--GAag--CAC------UGGUGGUGGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 22246 0.68 0.946402
Target:  5'- aACGACUaCGUGACa---ACCGGCACg -3'
miRNA:   3'- cUGUUGAaGCACUGguggUGGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 34480 0.69 0.900209
Target:  5'- uACAGCcuggUgGUGGCCaaGCCGCCGACGu -3'
miRNA:   3'- cUGUUGa---AgCACUGG--UGGUGGUUGUg -5'
9789 5' -50.5 NC_002593.1 + 4068 0.69 0.900209
Target:  5'- cGACGGCUaCGUGuCCGaaauuagcgaCACCGGCACc -3'
miRNA:   3'- -CUGUUGAaGCACuGGUg---------GUGGUUGUG- -5'
9789 5' -50.5 NC_002593.1 + 34606 0.71 0.828259
Target:  5'- cGGCGGCU---UGGCCACCACCAGgcugUACg -3'
miRNA:   3'- -CUGUUGAagcACUGGUGGUGGUU----GUG- -5'
9789 5' -50.5 NC_002593.1 + 7465 0.72 0.800287
Target:  5'- cGCAACaaucccgUCGUuaccacGGCCACCACCAcGCGCg -3'
miRNA:   3'- cUGUUGa------AGCA------CUGGUGGUGGU-UGUG- -5'
9789 5' -50.5 NC_002593.1 + 13604 1.11 0.004109
Target:  5'- cGACAACUUCGUGACCACCACCAACACg -3'
miRNA:   3'- -CUGUUGAAGCACUGGUGGUGGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.