miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
979 5' -49.4 NC_000902.1 + 9252 0.66 0.972046
Target:  5'- cGUAGuCGAGAGUcGA-CGUuguuuaaagaGCCUGCCa -3'
miRNA:   3'- -CAUCuGCUUUCA-CUaGCG----------UGGAUGGg -5'
979 5' -49.4 NC_000902.1 + 25864 0.66 0.968837
Target:  5'- -cAGACGAAuuaaugcaGGUGAUCGaaaagguGCCUGCg- -3'
miRNA:   3'- caUCUGCUU--------UCACUAGCg------UGGAUGgg -5'
979 5' -49.4 NC_000902.1 + 53135 0.66 0.968837
Target:  5'- -aGGGCGAgcGUuAUCGUgaugACCUugCCa -3'
miRNA:   3'- caUCUGCUuuCAcUAGCG----UGGAugGG- -5'
979 5' -49.4 NC_000902.1 + 52693 0.66 0.968837
Target:  5'- -cGGACGAuAGaaUGcgUGCACCcUGCCg -3'
miRNA:   3'- caUCUGCUuUC--ACuaGCGUGG-AUGGg -5'
979 5' -49.4 NC_000902.1 + 6238 0.67 0.94883
Target:  5'- --cGACGAAAGUaugCGUaccGCCUGCUCu -3'
miRNA:   3'- cauCUGCUUUCAcuaGCG---UGGAUGGG- -5'
979 5' -49.4 NC_000902.1 + 34573 0.68 0.933448
Target:  5'- ---cACGAAAGaGGUCGCugCUGCaaCCa -3'
miRNA:   3'- caucUGCUUUCaCUAGCGugGAUG--GG- -5'
979 5' -49.4 NC_000902.1 + 21264 0.68 0.933448
Target:  5'- -cAGACGAAGaUGGUcaaaaCGCGCCUgauagacaucaaGCCCu -3'
miRNA:   3'- caUCUGCUUUcACUA-----GCGUGGA------------UGGG- -5'
979 5' -49.4 NC_000902.1 + 5774 1.14 0.002239
Target:  5'- aGUAGACGAAAGUGAUCGCACCUACCCg -3'
miRNA:   3'- -CAUCUGCUUUCACUAGCGUGGAUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.