Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
979 | 5' | -49.4 | NC_000902.1 | + | 52693 | 0.66 | 0.968837 |
Target: 5'- -cGGACGAuAGaaUGcgUGCACCcUGCCg -3' miRNA: 3'- caUCUGCUuUC--ACuaGCGUGG-AUGGg -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 6238 | 0.67 | 0.94883 |
Target: 5'- --cGACGAAAGUaugCGUaccGCCUGCUCu -3' miRNA: 3'- cauCUGCUUUCAcuaGCG---UGGAUGGG- -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 21264 | 0.68 | 0.933448 |
Target: 5'- -cAGACGAAGaUGGUcaaaaCGCGCCUgauagacaucaaGCCCu -3' miRNA: 3'- caUCUGCUUUcACUA-----GCGUGGA------------UGGG- -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 5774 | 1.14 | 0.002239 |
Target: 5'- aGUAGACGAAAGUGAUCGCACCUACCCg -3' miRNA: 3'- -CAUCUGCUUUCACUAGCGUGGAUGGG- -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 34573 | 0.68 | 0.933448 |
Target: 5'- ---cACGAAAGaGGUCGCugCUGCaaCCa -3' miRNA: 3'- caucUGCUUUCaCUAGCGugGAUG--GG- -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 25864 | 0.66 | 0.968837 |
Target: 5'- -cAGACGAAuuaaugcaGGUGAUCGaaaagguGCCUGCg- -3' miRNA: 3'- caUCUGCUU--------UCACUAGCg------UGGAUGgg -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 53135 | 0.66 | 0.968837 |
Target: 5'- -aGGGCGAgcGUuAUCGUgaugACCUugCCa -3' miRNA: 3'- caUCUGCUuuCAcUAGCG----UGGAugGG- -5' |
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979 | 5' | -49.4 | NC_000902.1 | + | 9252 | 0.66 | 0.972046 |
Target: 5'- cGUAGuCGAGAGUcGA-CGUuguuuaaagaGCCUGCCa -3' miRNA: 3'- -CAUCuGCUUUCA-CUaGCG----------UGGAUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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