miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9790 5' -52.1 NC_002593.1 + 13841 1.09 0.003826
Target:  5'- cGGAUCCAACCCUUGCAACCCCAACAAc -3'
miRNA:   3'- -CCUAGGUUGGGAACGUUGGGGUUGUU- -5'
9790 5' -52.1 NC_002593.1 + 56938 0.67 0.898909
Target:  5'- uGAUCCAuauauaucaACCCUaaucuauugcUGCAACCCCuguCGu -3'
miRNA:   3'- cCUAGGU---------UGGGA----------ACGUUGGGGuu-GUu -5'
9790 5' -52.1 NC_002593.1 + 13756 0.67 0.924317
Target:  5'- ---cCCAACCCcacCAACCCCGugGAu -3'
miRNA:   3'- ccuaGGUUGGGaacGUUGGGGUugUU- -5'
9790 5' -52.1 NC_002593.1 + 13734 0.66 0.92999
Target:  5'- uGGAUCCGcaGCCggUGUugAACCCCGGgGGa -3'
miRNA:   3'- -CCUAGGU--UGGgaACG--UUGGGGUUgUU- -5'
9790 5' -52.1 NC_002593.1 + 73896 0.66 0.940517
Target:  5'- aGGggCCAGCaCCUUGCcGCCCguGUAAu -3'
miRNA:   3'- -CCuaGGUUG-GGAACGuUGGGguUGUU- -5'
9790 5' -52.1 NC_002593.1 + 61556 0.66 0.954288
Target:  5'- uGcgCCGACCCUgugcuccauUGCAgcaaagacGCCuCCAACGAc -3'
miRNA:   3'- cCuaGGUUGGGA---------ACGU--------UGG-GGUUGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.