miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9791 5' -55.8 NC_002593.1 + 7173 0.66 0.87212
Target:  5'- uGUGGCUUaCACCGGCGACG--GUUGc -3'
miRNA:   3'- cCGCUGGA-GUGGCCGCUGUagUAGCc -5'
9791 5' -55.8 NC_002593.1 + 540 0.67 0.849021
Target:  5'- cGGUGACCaaucugaacucuUCGgUGGCuGGCAUCA-CGGc -3'
miRNA:   3'- -CCGCUGG------------AGUgGCCG-CUGUAGUaGCC- -5'
9791 5' -55.8 NC_002593.1 + 13584 0.68 0.788482
Target:  5'- cGGUGACCUgAgCGGCGAgAg---CGGc -3'
miRNA:   3'- -CCGCUGGAgUgGCCGCUgUaguaGCC- -5'
9791 5' -55.8 NC_002593.1 + 37505 0.68 0.779192
Target:  5'- aGGUGGCCgcUCAucCUGGUGACGUgGUgCGGc -3'
miRNA:   3'- -CCGCUGG--AGU--GGCCGCUGUAgUA-GCC- -5'
9791 5' -55.8 NC_002593.1 + 71163 0.68 0.760219
Target:  5'- gGGCaGACC-C-UCGGCGACAagcUUGUCGGc -3'
miRNA:   3'- -CCG-CUGGaGuGGCCGCUGU---AGUAGCC- -5'
9791 5' -55.8 NC_002593.1 + 81201 0.7 0.649635
Target:  5'- uGGCGACCgCGCCcacGGCGACcacCAUUGa -3'
miRNA:   3'- -CCGCUGGaGUGG---CCGCUGua-GUAGCc -5'
9791 5' -55.8 NC_002593.1 + 51792 0.71 0.598074
Target:  5'- gGGCGaguaGCUUCGagagCGGCGACGucuucUCAUCGGu -3'
miRNA:   3'- -CCGC----UGGAGUg---GCCGCUGU-----AGUAGCC- -5'
9791 5' -55.8 NC_002593.1 + 9929 0.78 0.282455
Target:  5'- cGGCGACCUUAUCGGCGAU----UUGGg -3'
miRNA:   3'- -CCGCUGGAGUGGCCGCUGuaguAGCC- -5'
9791 5' -55.8 NC_002593.1 + 18139 0.79 0.227283
Target:  5'- gGGCGACCUCACCGGCaACccgAUUAUCu- -3'
miRNA:   3'- -CCGCUGGAGUGGCCGcUG---UAGUAGcc -5'
9791 5' -55.8 NC_002593.1 + 18058 0.97 0.0159
Target:  5'- cGGUGACUUCAUCGGCGACAUCAUUGGg -3'
miRNA:   3'- -CCGCUGGAGUGGCCGCUGUAGUAGCC- -5'
9791 5' -55.8 NC_002593.1 + 18028 1.12 0.00156
Target:  5'- uGGCGACCUCACCGGCGACAUCAUCGGu -3'
miRNA:   3'- -CCGCUGGAGUGGCCGCUGUAGUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.