miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9793 5' -45.9 NC_002593.1 + 23681 0.75 0.889861
Target:  5'- ----cGGACCCGGcACCuGUUCAGCAGCc -3'
miRNA:   3'- aaagaUUUGGGUC-UGG-CAAGUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 29217 1.08 0.017398
Target:  5'- uUUUCUAAACCCAGACCGUUCAACAACu -3'
miRNA:   3'- -AAAGAUUUGGGUCUGGCAAGUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 29501 0.68 0.996974
Target:  5'- -aUCUAGACgagcaUUGGACCGUggaCGACGACa -3'
miRNA:   3'- aaAGAUUUG-----GGUCUGGCAa--GUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 51843 0.66 0.999638
Target:  5'- --cCUGGACCUGGAgCGU-CGGCGAg -3'
miRNA:   3'- aaaGAUUUGGGUCUgGCAaGUUGUUg -5'
9793 5' -45.9 NC_002593.1 + 66961 0.66 0.999718
Target:  5'- -gUCUGGACCacguaCGGAUCGa-CAACGACa -3'
miRNA:   3'- aaAGAUUUGG-----GUCUGGCaaGUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 70016 0.66 0.999638
Target:  5'- ---aUGGGCCU-GACCGcgUCGGCGGCg -3'
miRNA:   3'- aaagAUUUGGGuCUGGCa-AGUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 75849 0.81 0.590562
Target:  5'- -gUCUu--CUCAGACUGUUCAACAACg -3'
miRNA:   3'- aaAGAuuuGGGUCUGGCAAGUUGUUG- -5'
9793 5' -45.9 NC_002593.1 + 94288 0.66 0.999718
Target:  5'- ----cAAACCCcucACCGUUCAGCAu- -3'
miRNA:   3'- aaagaUUUGGGuc-UGGCAAGUUGUug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.