miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9794 3' -61.2 NC_002593.1 + 7465 0.69 0.375308
Target:  5'- cGCAacaaUCCCGUcguuaCCACGGCCACCaccacGCGc -3'
miRNA:   3'- uCGU----GGGGCA-----GGUGCCGGUGGaa---CGC- -5'
9794 3' -61.2 NC_002593.1 + 10964 0.69 0.41738
Target:  5'- cAGUGCCCCGcCCGCGGgaaCACUgcUGCa -3'
miRNA:   3'- -UCGUGGGGCaGGUGCCg--GUGGa-ACGc -5'
9794 3' -61.2 NC_002593.1 + 11697 0.66 0.538725
Target:  5'- cGCuCCCUGUCCAUGGCguCCUc--- -3'
miRNA:   3'- uCGuGGGGCAGGUGCCGguGGAacgc -5'
9794 3' -61.2 NC_002593.1 + 20493 0.68 0.471471
Target:  5'- cAGU-CCgCGUgaCUACGGUCACCUUGCu -3'
miRNA:   3'- -UCGuGGgGCA--GGUGCCGGUGGAACGc -5'
9794 3' -61.2 NC_002593.1 + 31057 1.09 0.000602
Target:  5'- gAGCACCCCGUCCACGGCCACCUUGCGg -3'
miRNA:   3'- -UCGUGGGGCAGGUGCCGGUGGAACGC- -5'
9794 3' -61.2 NC_002593.1 + 37501 0.68 0.426134
Target:  5'- gAGCACggggaugCUGagCACGGCCACCUcgGCGa -3'
miRNA:   3'- -UCGUGg------GGCagGUGCCGGUGGAa-CGC- -5'
9794 3' -61.2 NC_002593.1 + 37635 0.68 0.462204
Target:  5'- cGCACCaCGUCaccaggaugaGCGGCCACCUgaucgaucUGCc -3'
miRNA:   3'- uCGUGGgGCAGg---------UGCCGGUGGA--------ACGc -5'
9794 3' -61.2 NC_002593.1 + 38251 0.66 0.578615
Target:  5'- cAGCACUUgaaUCACGGCCGCUUUGUa -3'
miRNA:   3'- -UCGUGGGgcaGGUGCCGGUGGAACGc -5'
9794 3' -61.2 NC_002593.1 + 50782 0.66 0.576603
Target:  5'- uGCGCCgCGaCCGCGGCaucguucaucaaAUCUUGCa -3'
miRNA:   3'- uCGUGGgGCaGGUGCCGg-----------UGGAACGc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.