miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9794 5' -46.7 NC_002593.1 + 37508 0.66 0.999418
Target:  5'- cGACG-AGGAGcACGgGGAUGCUgagcacggccaccUCGGc -3'
miRNA:   3'- -CUGCaUUUUUaUGCgCCUGCGA-------------AGCC- -5'
9794 5' -46.7 NC_002593.1 + 59799 0.66 0.999418
Target:  5'- uACGUuuaaccgGAGAGUGCGCaGGAuCGCUaaucacauuuUCGGc -3'
miRNA:   3'- cUGCA-------UUUUUAUGCG-CCU-GCGA----------AGCC- -5'
9794 5' -46.7 NC_002593.1 + 66188 0.66 0.999642
Target:  5'- cGACGUGGugacuguUGCGGACGCggUUGu -3'
miRNA:   3'- -CUGCAUUuuuau--GCGCCUGCGa-AGCc -5'
9794 5' -46.7 NC_002593.1 + 57718 0.66 0.999547
Target:  5'- cGGCGgaGGAGUcgGCGGugGggUCGGc -3'
miRNA:   3'- -CUGCauUUUUAugCGCCugCgaAGCC- -5'
9794 5' -46.7 NC_002593.1 + 74315 0.67 0.998319
Target:  5'- uGGCGaacaagcuGUACGCGGACGCggCu- -3'
miRNA:   3'- -CUGCauuuu---UAUGCGCCUGCGaaGcc -5'
9794 5' -46.7 NC_002593.1 + 57864 0.67 0.998671
Target:  5'- nGugG-AGGAGUugGUGGAgGggUCGGu -3'
miRNA:   3'- -CugCaUUUUUAugCGCCUgCgaAGCC- -5'
9794 5' -46.7 NC_002593.1 + 29854 0.67 0.998915
Target:  5'- uACGUGccgg-GCGCGGugGCgcUGGc -3'
miRNA:   3'- cUGCAUuuuuaUGCGCCugCGaaGCC- -5'
9794 5' -46.7 NC_002593.1 + 35559 0.68 0.998043
Target:  5'- ---aUAAuuGUACuCGGGCGCUUUGGc -3'
miRNA:   3'- cugcAUUuuUAUGcGCCUGCGAAGCC- -5'
9794 5' -46.7 NC_002593.1 + 30297 0.68 0.997182
Target:  5'- cGCGUugcuGAAgcagaGgGCGGGCGCUUCGc -3'
miRNA:   3'- cUGCAuu--UUUa----UgCGCCUGCGAAGCc -5'
9794 5' -46.7 NC_002593.1 + 33318 0.7 0.990094
Target:  5'- cGAC---AGAGUACGCGGugGUaaCGGa -3'
miRNA:   3'- -CUGcauUUUUAUGCGCCugCGaaGCC- -5'
9794 5' -46.7 NC_002593.1 + 57892 0.72 0.963606
Target:  5'- uGugGgaggAGGAGUAgGCGGugGUgUCGGu -3'
miRNA:   3'- -CugCa---UUUUUAUgCGCCugCGaAGCC- -5'
9794 5' -46.7 NC_002593.1 + 71505 0.73 0.955829
Target:  5'- gGACGUGaugGAGGUGgGCGGACGCcgauugaGGa -3'
miRNA:   3'- -CUGCAU---UUUUAUgCGCCUGCGaag----CC- -5'
9794 5' -46.7 NC_002593.1 + 1839 0.75 0.886225
Target:  5'- cGACGUAcGAGUGCGUGGAggguugUGCggCGGu -3'
miRNA:   3'- -CUGCAUuUUUAUGCGCCU------GCGaaGCC- -5'
9794 5' -46.7 NC_002593.1 + 17104 0.76 0.837039
Target:  5'- uGACGUGGuuuucguAAUACGUaGugGCUUCGGu -3'
miRNA:   3'- -CUGCAUUu------UUAUGCGcCugCGAAGCC- -5'
9794 5' -46.7 NC_002593.1 + 31022 1.12 0.011803
Target:  5'- cGACGUAAAAAUACGCGGACGCUUCGGu -3'
miRNA:   3'- -CUGCAUUUUUAUGCGCCUGCGAAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.