miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9796 3' -52 NC_002593.1 + 38724 1.1 0.004228
Target:  5'- aCACGGCCAACGUCGGUUUCCACAACAg -3'
miRNA:   3'- -GUGCCGGUUGCAGCCAAAGGUGUUGU- -5'
9796 3' -52 NC_002593.1 + 4605 0.73 0.691623
Target:  5'- uUACGGCCGacACGUCGcGUcucgUUCCguACAGCAu -3'
miRNA:   3'- -GUGCCGGU--UGCAGC-CA----AAGG--UGUUGU- -5'
9796 3' -52 NC_002593.1 + 28906 0.68 0.900566
Target:  5'- gACGGCCAcguguacucgACGagGGgcaaucugcuUUUCCGCGACGg -3'
miRNA:   3'- gUGCCGGU----------UGCagCC----------AAAGGUGUUGU- -5'
9796 3' -52 NC_002593.1 + 28965 0.66 0.96241
Target:  5'- aACGGCUccugGACGcCGGUaagacgacUUCCACGuACGa -3'
miRNA:   3'- gUGCCGG----UUGCaGCCA--------AAGGUGU-UGU- -5'
9796 3' -52 NC_002593.1 + 49820 0.66 0.965904
Target:  5'- uUACGGCCGAUGacuaggGGUUugcaaaaaUUCACGACAg -3'
miRNA:   3'- -GUGCCGGUUGCag----CCAA--------AGGUGUUGU- -5'
9796 3' -52 NC_002593.1 + 1543 0.66 0.965904
Target:  5'- uGCGGuCCGACGUaguaaGGg-UCCugAGCGc -3'
miRNA:   3'- gUGCC-GGUUGCAg----CCaaAGGugUUGU- -5'
9796 3' -52 NC_002593.1 + 100515 0.66 0.965904
Target:  5'- --aGGUCAcCGUCGGguauaUUUCCACGAg- -3'
miRNA:   3'- gugCCGGUuGCAGCC-----AAAGGUGUUgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.