miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9797 5' -54.4 NC_002593.1 + 50748 0.72 0.598873
Target:  5'- cGGcACCCAACACGGUGUUACCgCCg-- -3'
miRNA:   3'- -CCuUGGGUUGUGCUGCGAUGG-GGagu -5'
9797 5' -54.4 NC_002593.1 + 1644 0.68 0.811557
Target:  5'- aGGAAUUCGcGCcCGACG-UACCCCUCu -3'
miRNA:   3'- -CCUUGGGU-UGuGCUGCgAUGGGGAGu -5'
9797 5' -54.4 NC_002593.1 + 1466 0.68 0.829251
Target:  5'- ---uCCCGACAgggugUGGCGUUcCCCCUCAc -3'
miRNA:   3'- ccuuGGGUUGU-----GCUGCGAuGGGGAGU- -5'
9797 5' -54.4 NC_002593.1 + 71467 0.66 0.911407
Target:  5'- cGGGACCCA--ACGACG-UGCCgCUgGa -3'
miRNA:   3'- -CCUUGGGUugUGCUGCgAUGGgGAgU- -5'
9797 5' -54.4 NC_002593.1 + 37888 0.66 0.891798
Target:  5'- --cACCCGcCACGACGC-GCUgCUCGu -3'
miRNA:   3'- ccuUGGGUuGUGCUGCGaUGGgGAGU- -5'
9797 5' -54.4 NC_002593.1 + 81187 0.66 0.891798
Target:  5'- -uGAUCCGGCucaucguCGACGCUccAUCCCUUAa -3'
miRNA:   3'- ccUUGGGUUGu------GCUGCGA--UGGGGAGU- -5'
9797 5' -54.4 NC_002593.1 + 90339 0.69 0.744671
Target:  5'- --uGCUCAACGCcacauACGcCUGCCCCUCGa -3'
miRNA:   3'- ccuUGGGUUGUGc----UGC-GAUGGGGAGU- -5'
9797 5' -54.4 NC_002593.1 + 67644 1.11 0.002079
Target:  5'- cGGAACCCAACACGACGCUACCCCUCAc -3'
miRNA:   3'- -CCUUGGGUUGUGCUGCGAUGGGGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.