miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9799 5' -46.7 NC_002593.1 + 30286 0.66 0.99883
Target:  5'- ---aGCAGAGGg--CGGGCGCUuCGCu -3'
miRNA:   3'- uaaaCGUUUUUuuaGCCCGUGGcGUG- -5'
9799 5' -46.7 NC_002593.1 + 34664 0.66 0.998805
Target:  5'- -aUUGCAuuggcaccauuacGAGAA--CGGGCGCCgGCAUc -3'
miRNA:   3'- uaAACGU-------------UUUUUuaGCCCGUGG-CGUG- -5'
9799 5' -46.7 NC_002593.1 + 29187 0.66 0.99856
Target:  5'- ---gGUAAAucuGcgCGGGUugUGCACg -3'
miRNA:   3'- uaaaCGUUUuu-UuaGCCCGugGCGUG- -5'
9799 5' -46.7 NC_002593.1 + 55022 0.66 0.997861
Target:  5'- ---cGCAcccguGAUUGGGCAUCGCu- -3'
miRNA:   3'- uaaaCGUuuuu-UUAGCCCGUGGCGug -5'
9799 5' -46.7 NC_002593.1 + 9892 0.67 0.9948
Target:  5'- --cUGC-AGGGAAUCGGGguUCGCu- -3'
miRNA:   3'- uaaACGuUUUUUUAGCCCguGGCGug -5'
9799 5' -46.7 NC_002593.1 + 71016 0.68 0.992852
Target:  5'- ---aGCAGAucc-UCGGGCACCcuuucGUACa -3'
miRNA:   3'- uaaaCGUUUuuuuAGCCCGUGG-----CGUG- -5'
9799 5' -46.7 NC_002593.1 + 19894 0.68 0.992741
Target:  5'- aAUUUGCAAAcGuuacccccgucgcAAUCcGGCACCgGCACa -3'
miRNA:   3'- -UAAACGUUUuU-------------UUAGcCCGUGG-CGUG- -5'
9799 5' -46.7 NC_002593.1 + 52501 0.68 0.992741
Target:  5'- -cUUGCGAAAugauuUCGGcGCGCCucaaagaGCACa -3'
miRNA:   3'- uaAACGUUUUuuu--AGCC-CGUGG-------CGUG- -5'
9799 5' -46.7 NC_002593.1 + 86972 0.69 0.985405
Target:  5'- --aUGCAAAAu--UUGGGCGCCaguuuGUACa -3'
miRNA:   3'- uaaACGUUUUuuuAGCCCGUGG-----CGUG- -5'
9799 5' -46.7 NC_002593.1 + 30423 0.72 0.934828
Target:  5'- --gUGCAGucuAGAGUCGGGaCGCaGCACc -3'
miRNA:   3'- uaaACGUUu--UUUUAGCCC-GUGgCGUG- -5'
9799 5' -46.7 NC_002593.1 + 10992 1.08 0.014322
Target:  5'- cAUUUGCAAAAAAAUCGGGCACCGCACc -3'
miRNA:   3'- -UAAACGUUUUUUUAGCCCGUGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.