miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
98 3' -62.9 AC_000006.1 + 16605 0.66 0.253081
Target:  5'- cGCGUGCGCcgcguaaccaacGCGC-CGGGGCcg--CUCg -3'
miRNA:   3'- -UGCACGCG------------CGCGcGCCCCGacuaGGG- -5'
98 3' -62.9 AC_000006.1 + 21754 0.66 0.253081
Target:  5'- gGCGcUGuCGcCGCgGCGCGGGcGCaGGcUCCCu -3'
miRNA:   3'- -UGC-AC-GC-GCG-CGCGCCC-CGaCU-AGGG- -5'
98 3' -62.9 AC_000006.1 + 12585 0.66 0.24676
Target:  5'- aGCGUGaGcCGCGCGCuGGGGCaGAacgacaCCg -3'
miRNA:   3'- -UGCACgC-GCGCGCG-CCCCGaCUag----GG- -5'
98 3' -62.9 AC_000006.1 + 9996 0.67 0.228581
Target:  5'- -gGUGgccgGCGCGCcCGGGGCcaGGUCCUc -3'
miRNA:   3'- ugCACg---CGCGCGcGCCCCGa-CUAGGG- -5'
98 3' -62.9 AC_000006.1 + 8756 0.67 0.226827
Target:  5'- gGCGUcGCGCGCGCGCaugaccaccugcgcGaGGUUGAgcUCCa -3'
miRNA:   3'- -UGCA-CGCGCGCGCG--------------CcCCGACU--AGGg -5'
98 3' -62.9 AC_000006.1 + 20191 0.67 0.222778
Target:  5'- -gGUGgGCGCGgGCGGacGGCagagGAUCUg -3'
miRNA:   3'- ugCACgCGCGCgCGCC--CCGa---CUAGGg -5'
98 3' -62.9 AC_000006.1 + 22267 0.67 0.2171
Target:  5'- cAUGuUGCGCGCggucauguccaGCGCGGcGCUGGgaguggCCCc -3'
miRNA:   3'- -UGC-ACGCGCG-----------CGCGCCcCGACUa-----GGG- -5'
98 3' -62.9 AC_000006.1 + 19575 0.67 0.208274
Target:  5'- gGCG-GCGCgGCGCGCGGcucgcaucauggcccGGCgg--CCCg -3'
miRNA:   3'- -UGCaCGCG-CGCGCGCC---------------CCGacuaGGG- -5'
98 3' -62.9 AC_000006.1 + 21303 0.67 0.206116
Target:  5'- uUGUGCGC-CGCGCuGGGgaGggCCa -3'
miRNA:   3'- uGCACGCGcGCGCGcCCCgaCuaGGg -5'
98 3' -62.9 AC_000006.1 + 11064 0.67 0.206116
Target:  5'- cAUGUGCGCacccugaucGCGCGCGaGGaGgUGG-CCCu -3'
miRNA:   3'- -UGCACGCG---------CGCGCGC-CC-CgACUaGGG- -5'
98 3' -62.9 AC_000006.1 + 10479 0.67 0.200807
Target:  5'- cCGUGagaucCGCGUGCuGCGGGcGCgauUGGUCCUc -3'
miRNA:   3'- uGCAC-----GCGCGCG-CGCCC-CG---ACUAGGG- -5'
98 3' -62.9 AC_000006.1 + 23079 0.68 0.185587
Target:  5'- cGCGUucacgaucgccaGCaccuucuCGUGCGUGGGGUUGGUCCg -3'
miRNA:   3'- -UGCA------------CGc------GCGCGCGCCCCGACUAGGg -5'
98 3' -62.9 AC_000006.1 + 26294 0.68 0.171395
Target:  5'- --aUGCGCGCGCGCgacgccgacGGGGacgUGGUCUa -3'
miRNA:   3'- ugcACGCGCGCGCG---------CCCCg--ACUAGGg -5'
98 3' -62.9 AC_000006.1 + 8375 0.69 0.153983
Target:  5'- cACGUcgGCGUG-GCGCucGGGCaGGUCCCg -3'
miRNA:   3'- -UGCA--CGCGCgCGCGc-CCCGaCUAGGG- -5'
98 3' -62.9 AC_000006.1 + 12366 0.71 0.114089
Target:  5'- aACcUGCGCGgGCuGUGGGGCgugcagGcgCCCg -3'
miRNA:   3'- -UGcACGCGCgCG-CGCCCCGa-----CuaGGG- -5'
98 3' -62.9 AC_000006.1 + 13347 0.71 0.114089
Target:  5'- ---aGCGCG-GCGCGGGgaugauGCUGAUgCCCg -3'
miRNA:   3'- ugcaCGCGCgCGCGCCC------CGACUA-GGG- -5'
98 3' -62.9 AC_000006.1 + 28460 0.78 0.031884
Target:  5'- uACGUGCGCGCcagcauccGCGgGGGGCgcuguuAUCCCa -3'
miRNA:   3'- -UGCACGCGCG--------CGCgCCCCGac----UAGGG- -5'
98 3' -62.9 AC_000006.1 + 8426 0.8 0.023201
Target:  5'- gGCGUGCGCGaCGaCGCGGcGGUUGAcaUCCUg -3'
miRNA:   3'- -UGCACGCGC-GC-GCGCC-CCGACU--AGGG- -5'
98 3' -62.9 AC_000006.1 + 24078 1.09 0.000101
Target:  5'- cACGUGCGCGCGCGCGGGGCUGAUCCCc -3'
miRNA:   3'- -UGCACGCGCGCGCGCCCCGACUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.