Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9800 | 3' | -58.1 | NC_002593.1 | + | 11044 | 1.06 | 0.001311 |
Target: 5'- aUGCCGCUCCAGACAGACUCGCUGCAAa -3' miRNA: 3'- -ACGGCGAGGUCUGUCUGAGCGACGUU- -5' |
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9800 | 3' | -58.1 | NC_002593.1 | + | 3070 | 0.8 | 0.10228 |
Target: 5'- cGCUGUUCCAGacGCAGAUUUGCUGCAc -3' miRNA: 3'- aCGGCGAGGUC--UGUCUGAGCGACGUu -5' |
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9800 | 3' | -58.1 | NC_002593.1 | + | 69624 | 0.67 | 0.608278 |
Target: 5'- cGCCGCUCacccuuucgaCGGACAuGuACUCGCUGa-- -3' miRNA: 3'- aCGGCGAG----------GUCUGU-C-UGAGCGACguu -5' |
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9800 | 3' | -58.1 | NC_002593.1 | + | 39051 | 0.66 | 0.650667 |
Target: 5'- cGgCGuUUCCGGaACGGAUUCGCgGCAAa -3' miRNA: 3'- aCgGC-GAGGUC-UGUCUGAGCGaCGUU- -5' |
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9800 | 3' | -58.1 | NC_002593.1 | + | 31009 | 0.69 | 0.484782 |
Target: 5'- cGCggaCGCUUCGGugccGCAGACggCGCUGCAGu -3' miRNA: 3'- aCG---GCGAGGUC----UGUCUGa-GCGACGUU- -5' |
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9800 | 3' | -58.1 | NC_002593.1 | + | 1327 | 0.73 | 0.303743 |
Target: 5'- uUGCCGCUCCAGuuGCAGACaaGCUuaAGa -3' miRNA: 3'- -ACGGCGAGGUC--UGUCUGagCGAcgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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