miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9802 5' -58.7 NC_002593.1 + 30321 0.66 0.706896
Target:  5'- gUGUCUCUCGuaugUCGAGUuguACGCGUuGCUGa -3'
miRNA:   3'- -ACGGGGAGC----AGCUCA---UGUGCAcCGGC- -5'
9802 5' -58.7 NC_002593.1 + 53751 0.67 0.666362
Target:  5'- -aCUCCUUGUCGGGgcacACACGuUGGCUc -3'
miRNA:   3'- acGGGGAGCAGCUCa---UGUGC-ACCGGc -5'
9802 5' -58.7 NC_002593.1 + 37902 0.69 0.55413
Target:  5'- uUGCUgUUcaCGUCGAGcgacacagAUACGUGGCCGa -3'
miRNA:   3'- -ACGGgGA--GCAGCUCa-------UGUGCACCGGC- -5'
9802 5' -58.7 NC_002593.1 + 81487 0.69 0.52427
Target:  5'- -aCUCC-CGUCGuGUGCACGUGacacGCCGg -3'
miRNA:   3'- acGGGGaGCAGCuCAUGUGCAC----CGGC- -5'
9802 5' -58.7 NC_002593.1 + 31475 0.69 0.51445
Target:  5'- gGUCUCaCGUCgGGGUGCGCGUGGUUa -3'
miRNA:   3'- aCGGGGaGCAG-CUCAUGUGCACCGGc -5'
9802 5' -58.7 NC_002593.1 + 28778 1.08 0.001286
Target:  5'- uUGCCCCUCGUCGAGUACACGUGGCCGu -3'
miRNA:   3'- -ACGGGGAGCAGCUCAUGUGCACCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.