miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9804 3' -54 NC_002593.1 + 8397 0.69 0.785374
Target:  5'- aCACCCcuaucGGUGACGCGAAACaGAgaGUa- -3'
miRNA:   3'- -GUGGGa----CCACUGCGCUUUG-CUg-CAcg -5'
9804 3' -54 NC_002593.1 + 12585 0.71 0.705761
Target:  5'- gCGCCUgGGUGACGaGGAGCGccuGCGUGg -3'
miRNA:   3'- -GUGGGaCCACUGCgCUUUGC---UGCACg -5'
9804 3' -54 NC_002593.1 + 13894 0.68 0.842589
Target:  5'- gACCUcGGUGguaaagagcuuguugGCGgGGAACGugGUGUc -3'
miRNA:   3'- gUGGGaCCAC---------------UGCgCUUUGCugCACG- -5'
9804 3' -54 NC_002593.1 + 30779 0.68 0.855678
Target:  5'- aCACCCUGccgagcGUGAgCGUGAAcguCGACGgGCc -3'
miRNA:   3'- -GUGGGAC------CACU-GCGCUUu--GCUGCaCG- -5'
9804 3' -54 NC_002593.1 + 30839 1.11 0.002422
Target:  5'- cCACCCUGGUGACGCGAAACGACGUGCc -3'
miRNA:   3'- -GUGGGACCACUGCGCUUUGCUGCACG- -5'
9804 3' -54 NC_002593.1 + 31004 0.66 0.906151
Target:  5'- aCGCUUcGGUGcCGC-AGACGGCGcUGCa -3'
miRNA:   3'- -GUGGGaCCACuGCGcUUUGCUGC-ACG- -5'
9804 3' -54 NC_002593.1 + 37515 0.77 0.361321
Target:  5'- uCAUCCUGGUGACGUGguGCGGCa--- -3'
miRNA:   3'- -GUGGGACCACUGCGCuuUGCUGcacg -5'
9804 3' -54 NC_002593.1 + 99432 0.66 0.912395
Target:  5'- gACCacgucgguggUGGUGGCGgaCGAGACGACG-GUg -3'
miRNA:   3'- gUGGg---------ACCACUGC--GCUUUGCUGCaCG- -5'
9804 3' -54 NC_002593.1 + 100584 0.68 0.855678
Target:  5'- uUACCUUGGUaGACaGC--AACGGCGUGg -3'
miRNA:   3'- -GUGGGACCA-CUG-CGcuUUGCUGCACg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.