miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9807 5' -54.4 NC_002593.1 + 58761 0.66 0.874714
Target:  5'- -cAGCaGAACGugAUuuuuaaaauaauuacCAGCGGCGUCAu -3'
miRNA:   3'- ucUCGaCUUGUugUA---------------GUCGCCGCGGU- -5'
9807 5' -54.4 NC_002593.1 + 51756 0.66 0.871644
Target:  5'- --cGgUGAACGugAaCGGCGGCGUCu -3'
miRNA:   3'- ucuCgACUUGUugUaGUCGCCGCGGu -5'
9807 5' -54.4 NC_002593.1 + 32022 0.67 0.802875
Target:  5'- cGAGCUGGACGACAg-GGCGGaagaCGUg- -3'
miRNA:   3'- uCUCGACUUGUUGUagUCGCC----GCGgu -5'
9807 5' -54.4 NC_002593.1 + 50065 0.67 0.810324
Target:  5'- cGAGCcaucgaggacgaGGACGACGUCgauguGGUGGUGCCGg -3'
miRNA:   3'- uCUCGa-----------CUUGUUGUAG-----UCGCCGCGGU- -5'
9807 5' -54.4 NC_002593.1 + 31626 0.67 0.836328
Target:  5'- cGGGGCgucAACAACGUgAGCGGUaacggcauccacgaGCCGa -3'
miRNA:   3'- -UCUCGac-UUGUUGUAgUCGCCG--------------CGGU- -5'
9807 5' -54.4 NC_002593.1 + 34619 0.67 0.802875
Target:  5'- cGAGUcGG--GACGUCGGCGGCuugGCCAc -3'
miRNA:   3'- uCUCGaCUugUUGUAGUCGCCG---CGGU- -5'
9807 5' -54.4 NC_002593.1 + 11141 0.67 0.802875
Target:  5'- cGuGUUGAagaaGCAGCAUUugguGCGGUGCCc -3'
miRNA:   3'- uCuCGACU----UGUUGUAGu---CGCCGCGGu -5'
9807 5' -54.4 NC_002593.1 + 12846 0.68 0.774006
Target:  5'- gGGuGCaGAGCGACGaCGGCGGCGgUg -3'
miRNA:   3'- -UCuCGaCUUGUUGUaGUCGCCGCgGu -5'
9807 5' -54.4 NC_002593.1 + 97865 0.68 0.75404
Target:  5'- uAGAGUugucguaauUGAGCAGugugUAUCugaugaugAGCGGCGCCAu -3'
miRNA:   3'- -UCUCG---------ACUUGUU----GUAG--------UCGCCGCGGU- -5'
9807 5' -54.4 NC_002593.1 + 70015 0.69 0.691624
Target:  5'- uGGGCcuGACcGCGUCGGCGGCGUUu -3'
miRNA:   3'- uCUCGacUUGuUGUAGUCGCCGCGGu -5'
9807 5' -54.4 NC_002593.1 + 35248 1.09 0.002221
Target:  5'- uAGAGCUGAACAACAUCAGCGGCGCCAa -3'
miRNA:   3'- -UCUCGACUUGUUGUAGUCGCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.