miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9808 3' -55.9 NC_002593.1 + 7849 0.72 0.509548
Target:  5'- cGCCAUUaucacaagACCGAgAGGGGGCacGUACg -3'
miRNA:   3'- -CGGUAG--------UGGUUgUCCCCCGacCAUGg -5'
9808 3' -55.9 NC_002593.1 + 10270 0.67 0.766551
Target:  5'- uGCCAUUAauagGACGGGGGGgUcGUACUa -3'
miRNA:   3'- -CGGUAGUgg--UUGUCCCCCgAcCAUGG- -5'
9808 3' -55.9 NC_002593.1 + 29446 0.66 0.834225
Target:  5'- cGCCGUCACCGugcacgagcuuggccACAuuuuGGGGUUGGgucACa -3'
miRNA:   3'- -CGGUAGUGGU---------------UGUc---CCCCGACCa--UGg -5'
9808 3' -55.9 NC_002593.1 + 35312 1.13 0.000972
Target:  5'- cGCCAUCACCAACAGGGGGCUGGUACCc -3'
miRNA:   3'- -CGGUAGUGGUUGUCCCCCGACCAUGG- -5'
9808 3' -55.9 NC_002593.1 + 35484 0.66 0.839295
Target:  5'- cGUCGUCGCCAccggagGCgAGGGGuuGUUGGUGg- -3'
miRNA:   3'- -CGGUAGUGGU------UG-UCCCC--CGACCAUgg -5'
9808 3' -55.9 NC_002593.1 + 35631 0.66 0.830807
Target:  5'- gGUCGUCAUCAGaCAGGuGcuGCUGGUagucGCCu -3'
miRNA:   3'- -CGGUAGUGGUU-GUCC-Cc-CGACCA----UGG- -5'
9808 3' -55.9 NC_002593.1 + 67450 0.72 0.519567
Target:  5'- aCCAUCACCAcuaACGGccaGGGCUuGGUcACCg -3'
miRNA:   3'- cGGUAGUGGU---UGUCc--CCCGA-CCA-UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.