miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9810 5' -54.5 NC_002593.1 + 4542 0.66 0.896071
Target:  5'- aCGCGCUaaaccuGCGaGCGGAguacgCGuCGCCc -3'
miRNA:   3'- -GCGCGAaag---UGC-CGCCUaa---GCuGCGG- -5'
9810 5' -54.5 NC_002593.1 + 75694 0.67 0.874886
Target:  5'- gGCGa-UUCgACGaCGGAgaCGACGCCa -3'
miRNA:   3'- gCGCgaAAG-UGCcGCCUaaGCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 11557 0.67 0.867363
Target:  5'- aGgGUacuagUCAUGGUGGAg--GACGCCa -3'
miRNA:   3'- gCgCGaa---AGUGCCGCCUaagCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 37684 0.67 0.851656
Target:  5'- uGCGUgaugaGCGGCGGuaaaGGCGUCg -3'
miRNA:   3'- gCGCGaaag-UGCCGCCuaagCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 99390 0.69 0.771572
Target:  5'- gGCGUaaUCACGGUGacgUUGugGCCg -3'
miRNA:   3'- gCGCGaaAGUGCCGCcuaAGCugCGG- -5'
9810 5' -54.5 NC_002593.1 + 7943 0.69 0.751116
Target:  5'- uGCGuUUUUCGgGGCGGAUaaagugguagauuUCGACcCCa -3'
miRNA:   3'- gCGC-GAAAGUgCCGCCUA-------------AGCUGcGG- -5'
9810 5' -54.5 NC_002593.1 + 31306 0.7 0.742195
Target:  5'- aCGUGU--UCGCGGuCGGAUucacuUCGACGUUc -3'
miRNA:   3'- -GCGCGaaAGUGCC-GCCUA-----AGCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 30678 0.7 0.711909
Target:  5'- gGCGUUUUaCGacgUGGUGGA--CGACGCCg -3'
miRNA:   3'- gCGCGAAA-GU---GCCGCCUaaGCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 36446 0.71 0.653862
Target:  5'- uCGCGCUUcUCGUGGCgugcuacaacaaugaGGAggUGACGCCg -3'
miRNA:   3'- -GCGCGAA-AGUGCCG---------------CCUaaGCUGCGG- -5'
9810 5' -54.5 NC_002593.1 + 76247 0.71 0.639197
Target:  5'- gGCGUUUUCgucuACGGCGGcGUUCaACGCg -3'
miRNA:   3'- gCGCGAAAG----UGCCGCC-UAAGcUGCGg -5'
9810 5' -54.5 NC_002593.1 + 34249 0.82 0.181983
Target:  5'- gGUGCUgaggcugCGCGGCGGAUUCGACGa- -3'
miRNA:   3'- gCGCGAaa-----GUGCCGCCUAAGCUGCgg -5'
9810 5' -54.5 NC_002593.1 + 38560 1.13 0.001626
Target:  5'- gCGCGCUUUCACGGCGGAUUCGACGCCg -3'
miRNA:   3'- -GCGCGAAAGUGCCGCCUAAGCUGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.