miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9811 5' -60.1 NC_002593.1 + 91317 0.66 0.626396
Target:  5'- uGAUGCUCCAuuGGUCCAGucuaGUGCcuUCg -3'
miRNA:   3'- gCUGCGAGGU--CCAGGUCcag-CGCG--AG- -5'
9811 5' -60.1 NC_002593.1 + 42715 0.66 0.605985
Target:  5'- gGGCGUUCaCAGcGaCCAGGauaagagucugaUUGCGCUCg -3'
miRNA:   3'- gCUGCGAG-GUC-CaGGUCC------------AGCGCGAG- -5'
9811 5' -60.1 NC_002593.1 + 46607 0.7 0.380139
Target:  5'- -aACGUUCCGGGUCU--GUCGCGCg- -3'
miRNA:   3'- gcUGCGAGGUCCAGGucCAGCGCGag -5'
9811 5' -60.1 NC_002593.1 + 51725 1.09 0.000782
Target:  5'- cCGACGCUCCAGGUCCAGGUCGCGCUCu -3'
miRNA:   3'- -GCUGCGAGGUCCAGGUCCAGCGCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.