miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9813 5' -63.2 NC_002593.1 + 99419 0.66 0.523691
Target:  5'- gUGGUGGCgGaCGagaCgACGGUGACCaaaACCa -3'
miRNA:   3'- -ACCGCUGgC-GCg--GgUGCCGCUGG---UGG- -5'
9813 5' -63.2 NC_002593.1 + 12591 0.66 0.504747
Target:  5'- gGGUGACgaggaGCGCCUGCguGGUGAUucgCACCu -3'
miRNA:   3'- aCCGCUGg----CGCGGGUG--CCGCUG---GUGG- -5'
9813 5' -63.2 NC_002593.1 + 89393 0.66 0.504747
Target:  5'- cGcGCGGCCaaauuaguguagGUGCCCACGuCGACCcUCa -3'
miRNA:   3'- aC-CGCUGG------------CGCGGGUGCcGCUGGuGG- -5'
9813 5' -63.2 NC_002593.1 + 91070 0.66 0.495387
Target:  5'- cGGCGACCGUuuauuUCUAuCGGCcauuauGCCACCa -3'
miRNA:   3'- aCCGCUGGCGc----GGGU-GCCGc-----UGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 13692 0.67 0.467797
Target:  5'- aGGUcACCGCGCUCACc---ACCACCg -3'
miRNA:   3'- aCCGcUGGCGCGGGUGccgcUGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 23714 0.67 0.44985
Target:  5'- cGGCGG-CGCugGUCCACGGgGACagauugucaaaCACCg -3'
miRNA:   3'- aCCGCUgGCG--CGGGUGCCgCUG-----------GUGG- -5'
9813 5' -63.2 NC_002593.1 + 2755 0.67 0.44985
Target:  5'- -cGUaACCaCGCCCACGGC--CCACCa -3'
miRNA:   3'- acCGcUGGcGCGGGUGCCGcuGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 24044 0.67 0.44985
Target:  5'- cGcCGACUGCGCCU----CGACCACCa -3'
miRNA:   3'- aCcGCUGGCGCGGGugccGCUGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 519 0.67 0.44102
Target:  5'- cGGUGGCUG-GCaUCACGGCcacucuGGCUACCa -3'
miRNA:   3'- aCCGCUGGCgCG-GGUGCCG------CUGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 30822 0.67 0.432289
Target:  5'- aGuCGGuuGCGCuCCuCGGCGucguCCACCa -3'
miRNA:   3'- aCcGCUggCGCG-GGuGCCGCu---GGUGG- -5'
9813 5' -63.2 NC_002593.1 + 70014 0.67 0.432289
Target:  5'- gGGCcuGACCGCGUCgGCGGCGuuUAg- -3'
miRNA:   3'- aCCG--CUGGCGCGGgUGCCGCugGUgg -5'
9813 5' -63.2 NC_002593.1 + 29976 0.67 0.42366
Target:  5'- -aGCGccACCGCGCCCggcACGuaaCGAUCGCCu -3'
miRNA:   3'- acCGC--UGGCGCGGG---UGCc--GCUGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 13596 0.67 0.42366
Target:  5'- cGGCGAgaGCGgCUAUGGCGuCaagaACCg -3'
miRNA:   3'- aCCGCUggCGCgGGUGCCGCuGg---UGG- -5'
9813 5' -63.2 NC_002593.1 + 45677 0.67 0.421091
Target:  5'- cGGUGucGCUGUGaUCCACGucuauuauccauucGCGACCGCCc -3'
miRNA:   3'- aCCGC--UGGCGC-GGGUGC--------------CGCUGGUGG- -5'
9813 5' -63.2 NC_002593.1 + 11710 0.68 0.398404
Target:  5'- gUGGUuaaaucGCCGCucccuGUCCAUGGCGuccuCCACCa -3'
miRNA:   3'- -ACCGc-----UGGCG-----CGGGUGCCGCu---GGUGG- -5'
9813 5' -63.2 NC_002593.1 + 97164 0.68 0.397579
Target:  5'- -uGCGAUuuaacguUGCGCCCGCuGGCGugUuuGCCa -3'
miRNA:   3'- acCGCUG-------GCGCGGGUG-CCGCugG--UGG- -5'
9813 5' -63.2 NC_002593.1 + 30659 0.68 0.374134
Target:  5'- gUGGCGGCgUGCuCCCACGGUuuccGAUCcCCg -3'
miRNA:   3'- -ACCGCUG-GCGcGGGUGCCG----CUGGuGG- -5'
9813 5' -63.2 NC_002593.1 + 72652 0.69 0.335967
Target:  5'- aGGUGGaCGUGCgCUACGGCGACUcguguCCg -3'
miRNA:   3'- aCCGCUgGCGCG-GGUGCCGCUGGu----GG- -5'
9813 5' -63.2 NC_002593.1 + 38552 0.76 0.117291
Target:  5'- aGGCGACgGCGCgcuuUCACGGCGGauucgaCGCCg -3'
miRNA:   3'- aCCGCUGgCGCG----GGUGCCGCUg-----GUGG- -5'
9813 5' -63.2 NC_002593.1 + 81200 1.11 0.000319
Target:  5'- uUGGCGACCGCGCCCACGGCGACCACCa -3'
miRNA:   3'- -ACCGCUGGCGCGGGUGCCGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.