Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 99419 | 0.66 | 0.523691 |
Target: 5'- gUGGUGGCgGaCGagaCgACGGUGACCaaaACCa -3' miRNA: 3'- -ACCGCUGgC-GCg--GgUGCCGCUGG---UGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 89393 | 0.66 | 0.504747 |
Target: 5'- cGcGCGGCCaaauuaguguagGUGCCCACGuCGACCcUCa -3' miRNA: 3'- aC-CGCUGG------------CGCGGGUGCcGCUGGuGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 12591 | 0.66 | 0.504747 |
Target: 5'- gGGUGACgaggaGCGCCUGCguGGUGAUucgCACCu -3' miRNA: 3'- aCCGCUGg----CGCGGGUG--CCGCUG---GUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 91070 | 0.66 | 0.495387 |
Target: 5'- cGGCGACCGUuuauuUCUAuCGGCcauuauGCCACCa -3' miRNA: 3'- aCCGCUGGCGc----GGGU-GCCGc-----UGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 13692 | 0.67 | 0.467797 |
Target: 5'- aGGUcACCGCGCUCACc---ACCACCg -3' miRNA: 3'- aCCGcUGGCGCGGGUGccgcUGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 23714 | 0.67 | 0.44985 |
Target: 5'- cGGCGG-CGCugGUCCACGGgGACagauugucaaaCACCg -3' miRNA: 3'- aCCGCUgGCG--CGGGUGCCgCUG-----------GUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 24044 | 0.67 | 0.44985 |
Target: 5'- cGcCGACUGCGCCU----CGACCACCa -3' miRNA: 3'- aCcGCUGGCGCGGGugccGCUGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 2755 | 0.67 | 0.44985 |
Target: 5'- -cGUaACCaCGCCCACGGC--CCACCa -3' miRNA: 3'- acCGcUGGcGCGGGUGCCGcuGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 519 | 0.67 | 0.44102 |
Target: 5'- cGGUGGCUG-GCaUCACGGCcacucuGGCUACCa -3' miRNA: 3'- aCCGCUGGCgCG-GGUGCCG------CUGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 70014 | 0.67 | 0.432289 |
Target: 5'- gGGCcuGACCGCGUCgGCGGCGuuUAg- -3' miRNA: 3'- aCCG--CUGGCGCGGgUGCCGCugGUgg -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 30822 | 0.67 | 0.432289 |
Target: 5'- aGuCGGuuGCGCuCCuCGGCGucguCCACCa -3' miRNA: 3'- aCcGCUggCGCG-GGuGCCGCu---GGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 13596 | 0.67 | 0.42366 |
Target: 5'- cGGCGAgaGCGgCUAUGGCGuCaagaACCg -3' miRNA: 3'- aCCGCUggCGCgGGUGCCGCuGg---UGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 29976 | 0.67 | 0.42366 |
Target: 5'- -aGCGccACCGCGCCCggcACGuaaCGAUCGCCu -3' miRNA: 3'- acCGC--UGGCGCGGG---UGCc--GCUGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 45677 | 0.67 | 0.421091 |
Target: 5'- cGGUGucGCUGUGaUCCACGucuauuauccauucGCGACCGCCc -3' miRNA: 3'- aCCGC--UGGCGC-GGGUGC--------------CGCUGGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 11710 | 0.68 | 0.398404 |
Target: 5'- gUGGUuaaaucGCCGCucccuGUCCAUGGCGuccuCCACCa -3' miRNA: 3'- -ACCGc-----UGGCG-----CGGGUGCCGCu---GGUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 97164 | 0.68 | 0.397579 |
Target: 5'- -uGCGAUuuaacguUGCGCCCGCuGGCGugUuuGCCa -3' miRNA: 3'- acCGCUG-------GCGCGGGUG-CCGCugG--UGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 30659 | 0.68 | 0.374134 |
Target: 5'- gUGGCGGCgUGCuCCCACGGUuuccGAUCcCCg -3' miRNA: 3'- -ACCGCUG-GCGcGGGUGCCG----CUGGuGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 72652 | 0.69 | 0.335967 |
Target: 5'- aGGUGGaCGUGCgCUACGGCGACUcguguCCg -3' miRNA: 3'- aCCGCUgGCGCG-GGUGCCGCUGGu----GG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 38552 | 0.76 | 0.117291 |
Target: 5'- aGGCGACgGCGCgcuuUCACGGCGGauucgaCGCCg -3' miRNA: 3'- aCCGCUGgCGCG----GGUGCCGCUg-----GUGG- -5' |
|||||||
9813 | 5' | -63.2 | NC_002593.1 | + | 81200 | 1.11 | 0.000319 |
Target: 5'- uUGGCGACCGCGCCCACGGCGACCACCa -3' miRNA: 3'- -ACCGCUGGCGCGGGUGCCGCUGGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home