Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
982 | 3' | -50.6 | NC_000902.1 | + | 50162 | 0.66 | 0.952488 |
Target: 5'- aGGCCcGCcUUGCccgUGGCaACGCGCCg -3' miRNA: 3'- -CUGGaCGaAAUGua-GCUGcUGUGCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 26375 | 0.66 | 0.943073 |
Target: 5'- aACCUGUcgUUGCGggGAUggGGCugGCCu -3' miRNA: 3'- cUGGACGa-AAUGUagCUG--CUGugCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 6560 | 0.66 | 0.932519 |
Target: 5'- cGGCCUGUgu--CAguucUGACGAUGCGCg -3' miRNA: 3'- -CUGGACGaaauGUa---GCUGCUGUGCGg -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 7521 | 0.66 | 0.932519 |
Target: 5'- cACCUGUUUgaaucacucUGCAUCGAUcauuuGCaACGCCa -3' miRNA: 3'- cUGGACGAA---------AUGUAGCUGc----UG-UGCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 29973 | 0.68 | 0.854226 |
Target: 5'- uGACCagGCa-UAUGaCGACGAUACGCCc -3' miRNA: 3'- -CUGGa-CGaaAUGUaGCUGCUGUGCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 48987 | 0.69 | 0.827415 |
Target: 5'- -gUCUGCUgaaauuUCGGUGACGCGCCa -3' miRNA: 3'- cuGGACGAaaugu-AGCUGCUGUGCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 50416 | 0.74 | 0.569672 |
Target: 5'- cGGCCUGaUUUU-CAUcCGGCGuACGCGCCa -3' miRNA: 3'- -CUGGAC-GAAAuGUA-GCUGC-UGUGCGG- -5' |
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982 | 3' | -50.6 | NC_000902.1 | + | 14279 | 1.14 | 0.001694 |
Target: 5'- cGACCUGCUUUACAUCGACGACACGCCg -3' miRNA: 3'- -CUGGACGAAAUGUAGCUGCUGUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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