Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
982 | 5' | -51.1 | NC_000902.1 | + | 31158 | 0.67 | 0.895513 |
Target: 5'- -gGGUUCAGGUgaaaGUCgGGCGGguAAGCCGu -3' miRNA: 3'- gaCCGAGUUUAg---CAG-UCGCU--UUCGGC- -5' |
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982 | 5' | -51.1 | NC_000902.1 | + | 22944 | 0.67 | 0.893327 |
Target: 5'- uCUGGCgCAAcagaaggcgcugagGUCGUCGGaCGGuuGCCu -3' miRNA: 3'- -GACCGaGUU--------------UAGCAGUC-GCUuuCGGc -5' |
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982 | 5' | -51.1 | NC_000902.1 | + | 40599 | 0.67 | 0.88047 |
Target: 5'- uCUGGCggcggCAGguaaucccauGUCGcCAGgGAAGGCCc -3' miRNA: 3'- -GACCGa----GUU----------UAGCaGUCgCUUUCGGc -5' |
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982 | 5' | -51.1 | NC_000902.1 | + | 20639 | 0.7 | 0.716488 |
Target: 5'- gCUGGUUCAAAUC--CAGCaAGGGCCa -3' miRNA: 3'- -GACCGAGUUUAGcaGUCGcUUUCGGc -5' |
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982 | 5' | -51.1 | NC_000902.1 | + | 14315 | 1.09 | 0.002975 |
Target: 5'- uCUGGCUCAAAUCGUCAGCGAAAGCCGu -3' miRNA: 3'- -GACCGAGUUUAGCAGUCGCUUUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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